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The map label for this gene is hofQ [C]

Identifier: 167624205

GI number: 167624205

Start: 2763724

End: 2765160

Strand: Reverse

Name: hofQ [C]

Synonym: Shal_2281

Alternate gene names: 167624205

Gene position: 2765160-2763724 (Counterclockwise)

Preceding gene: 167624206

Following gene: 167624204

Centisome position: 52.9

GC content: 41.41

Gene sequence:

>1437_bases
ATGTCATTCCTTCGTCACTGTTCAATTGTTTGTTTGTTAACAATGTTGCAGGTATCAATCGCGTATGCCGGTGGTCCTAC
GCCAGGAGCAAGAAATGATATTCAGCGAATCCCTATATTTAAGTCAAGAGTACTTATGCTCAATGGGCCTATACATAGGG
TGTCTGTGGGTAATCCGAGTATTGCCGATATTAAGTTACTTCCTAATGACGAACTGTACATTTTGGGAAAACAATTAGGT
AGCACTAATATCATGATTTGGGACAAGAATGAGCAGCTTGCAAGAATTATGGATATTGAAGTGACTCATGACTTAAACGG
ATTAAAGACAAGGCTGCATCAGTTTCTTCCAACTGAAAAGTTGGGCGTTCAGACCTCTCAAGGGCAACTTTTATTAAGTG
GCCAAGCTTCTAATTTACAGAAAATGAATACTGCCGTTGAGCTTGCGCAGGGTTATGCAGAAGCCGCCGCAGGAGATCGT
GCTCCAAGTAAAGTGTTAAATATGATGACTATAGGTGGCGATCACCAAGTCATGCTCGAAGTGGTTGTCGCAGAGGTTCA
AAGAAACGTAGCGAGACAATTTGATTCAAAGTTTTTGATTTTCAATCAAGGCTCTAACTTATCAGGTGGTGTTATTGGTG
GCGGTGGAGGCTTTGATCCTGGAAGTATTGGTGGAGTCGACGGAAAAGGTTTATTTGCACAGTACATTAACGGTGACTTA
ATGATGAACTTTGCCTTAGATGTCGCTAAACAAAATGGATTAGCTAAAGTATTAGCTGAGCCTAATGTTACAGCTATGAG
CGGTCAGTCTGCCGAGTTTCTTTCAGGTGGGGAATTTCCAATCCCAGTGCCAGGTGAAAATGGCAATACAACCATCGAAT
ACAGAGACTACGGTGTAGGTGTAAAATTTGTGCCAACAGTTCTCGACTCTGGGCAAATTAATTTGAATCTAAATGTAGTG
GTTAGTGAGATTAGTACCGCCAATGGTTTTTCAATCTCCGGTAATACTTCAACCTCATTGGTTGTGCCGTCACTGGTAAA
AAGAAGCACTGCAACAACGGTTGAGTTGGCCGATGGGCAAACTATCGCCATTAGCGGTTTGATTAGTGACACATTACGAG
AAAATATCGATAAGTTGCCGGGATTAGGAGATGTACCAGTATTAGGTCAGTTATTTACCAGCAAAAGCTTTCAAAGTGGT
CAGAGTGAGTTGGTTATCCTAGTCACGCCTAGGCTTGTTCGGGCATTTAATCGCAAAGATATTTCGTTGCCTACTGATGG
TTTTGTTCTACCGTCAGATGTTGAATTTTACCTGCTAGGTAAACTGTCCCATAAAGAAAATACAGATGACACCAGTGATA
CTCCTTATGAGCCTGTTGAGTCAAAAACAAAACTAGATGACACAGGTACTCAACAAAAATATGGTCATTCACTTTAA

Upstream 100 bases:

>100_bases
AGTATTTCTGCTTAAAGGCATGAGTGAACAAGAGATAAAAGTAAAAAACTAACAAGTAGTTGATAACAAGCATTTAGATT
CATGTTTTAAGGAGAATAAC

Downstream 100 bases:

>100_bases
AGTTAGGAGTAAGGCTCATGAGATATGACGCTAAAGGTTCGTTTTATAATTGTTTTGTTGTCTTTTCTATCACAATTTTG
AGTTTAACAGGATGCACAAA

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MSFLRHCSIVCLLTMLQVSIAYAGGPTPGARNDIQRIPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPNDELYILGKQLG
STNIMIWDKNEQLARIMDIEVTHDLNGLKTRLHQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAAAGDR
APSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFLIFNQGSNLSGGVIGGGGGFDPGSIGGVDGKGLFAQYINGDL
MMNFALDVAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPVPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVV
VSEISTANGFSISGNTSTSLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSG
QSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENTDDTSDTPYEPVESKTKLDDTGTQQKYGHSL

Sequences:

>Translated_478_residues
MSFLRHCSIVCLLTMLQVSIAYAGGPTPGARNDIQRIPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPNDELYILGKQLG
STNIMIWDKNEQLARIMDIEVTHDLNGLKTRLHQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAAAGDR
APSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFLIFNQGSNLSGGVIGGGGGFDPGSIGGVDGKGLFAQYINGDL
MMNFALDVAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPVPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVV
VSEISTANGFSISGNTSTSLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSG
QSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENTDDTSDTPYEPVESKTKLDDTGTQQKYGHSL
>Mature_477_residues
SFLRHCSIVCLLTMLQVSIAYAGGPTPGARNDIQRIPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPNDELYILGKQLGS
TNIMIWDKNEQLARIMDIEVTHDLNGLKTRLHQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAAAGDRA
PSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFLIFNQGSNLSGGVIGGGGGFDPGSIGGVDGKGLFAQYINGDLM
MNFALDVAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPVPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVV
SEISTANGFSISGNTSTSLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSGQ
SELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENTDDTSDTPYEPVESKTKLDDTGTQQKYGHSL

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=215, Percent_Identity=30.2325581395349, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082242, Length=264, Percent_Identity=26.5151515151515, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 51180; Mature: 51049

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLRHCSIVCLLTMLQVSIAYAGGPTPGARNDIQRIPIFKSRVLMLNGPIHRVSVGNPS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEECCCCC
IADIKLLPNDELYILGKQLGSTNIMIWDKNEQLARIMDIEVTHDLNGLKTRLHQFLPTEK
CEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCCHHHHHHHHHHCCCHH
LGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAAAGDRAPSKVLNMMTIGGDHQVMLE
HCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEECCCHHHHHH
VVVAEVQRNVARQFDSKFLIFNQGSNLSGGVIGGGGGFDPGSIGGVDGKGLFAQYINGDL
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCE
MMNFALDVAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPVPGENGNTTIEYRDYGVG
EEEEHHHHHHCCCCEEECCCCCEEEECCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCC
VKFVPTVLDSGQINLNLNVVVSEISTANGFSISGNTSTSLVVPSLVKRSTATTVELADGQ
EEEEEHHCCCCEEEEEEEEEEEECCCCCCEEECCCCCCEEEHHHHHHCCCCCEEEECCCC
TIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSGQSELVILVTPRLVRAFNRKD
EEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCC
ISLPTDGFVLPSDVEFYLLGKLSHKENTDDTSDTPYEPVESKTKLDDTGTQQKYGHSL
CCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure 
SFLRHCSIVCLLTMLQVSIAYAGGPTPGARNDIQRIPIFKSRVLMLNGPIHRVSVGNPS
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEECCCCC
IADIKLLPNDELYILGKQLGSTNIMIWDKNEQLARIMDIEVTHDLNGLKTRLHQFLPTEK
CEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCCHHHHHHHHHHCCCHH
LGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAAAGDRAPSKVLNMMTIGGDHQVMLE
HCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEECCCHHHHHH
VVVAEVQRNVARQFDSKFLIFNQGSNLSGGVIGGGGGFDPGSIGGVDGKGLFAQYINGDL
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCE
MMNFALDVAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIPVPGENGNTTIEYRDYGVG
EEEEHHHHHHCCCCEEECCCCCEEEECCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCC
VKFVPTVLDSGQINLNLNVVVSEISTANGFSISGNTSTSLVVPSLVKRSTATTVELADGQ
EEEEEHHCCCCEEEEEEEEEEEECCCCCCEEECCCCCCEEEHHHHHHCCCCCEEEECCCC
TIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSGQSELVILVTPRLVRAFNRKD
EEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCC
ISLPTDGFVLPSDVEFYLLGKLSHKENTDDTSDTPYEPVESKTKLDDTGTQQKYGHSL
CCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]