| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624202
Identifier: 167624202
GI number: 167624202
Start: 2761547
End: 2762026
Strand: Reverse
Name: 167624202
Synonym: Shal_2278
Alternate gene names: NA
Gene position: 2762026-2761547 (Counterclockwise)
Preceding gene: 167624203
Following gene: 167624201
Centisome position: 52.84
GC content: 40.62
Gene sequence:
>480_bases ATGAATAATCAGTTATATGTCATGAAGCAAAAGGGGATTGCGGCTATCGAATTTACGATTGTCTTACCCTTGTTTTTAGT TTTGATATTATTTACAGCAGAGTTAGGACGAGGGATCTATCAGTATAGCCAGTTAACAAGAATGATCCGAGATGCTGGCC GTCACTTATCCCAAACCATAATCACAACCAGTAATGGCGTACCCTCGGTTTTAATTGACGAAAATTGTGATTACTGTATT TCTGATACAACCAACCTATTGGTCTACGGTGCTAATACAGGTGCTACACCGCTACTGTCTGGCATTGACATTACCGATGT TTCAATCTCAGAGCTTCCTATAGATAGTGGCATTTTAGTTATTTCCGTCGATTATGATTGGACGCCTATCTTTTTTGACA GGCTATCAGGGTTAGGCTTGGGAGACGGTGTTGACCTTAGTTTTAGCTTAAATTCAACGTACGCGGTGAGGGCTATATGA
Upstream 100 bases:
>100_bases AACAGTGGATTAGCTTCACTTGACCCTGACTATGTTGGGGATAGTTCAACGATTGTCCTATATTGGGATCCTGATAGTCC AGACTCTTAGGTGAATGAAC
Downstream 100 bases:
>100_bases AGCATATTAGAGGGGTTTATGCTATTGAGTTTTCTATCGTTGCGAGTGTGTTTTTTTTAGTGCTTTTTTCTGCAATCGAA GTGGGCAGATTATTATATAC
Product: TadE family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 159; Mature: 159
Protein sequence:
>159_residues MNNQLYVMKQKGIAAIEFTIVLPLFLVLILFTAELGRGIYQYSQLTRMIRDAGRHLSQTIITTSNGVPSVLIDENCDYCI SDTTNLLVYGANTGATPLLSGIDITDVSISELPIDSGILVISVDYDWTPIFFDRLSGLGLGDGVDLSFSLNSTYAVRAI
Sequences:
>Translated_159_residues MNNQLYVMKQKGIAAIEFTIVLPLFLVLILFTAELGRGIYQYSQLTRMIRDAGRHLSQTIITTSNGVPSVLIDENCDYCI SDTTNLLVYGANTGATPLLSGIDITDVSISELPIDSGILVISVDYDWTPIFFDRLSGLGLGDGVDLSFSLNSTYAVRAI >Mature_159_residues MNNQLYVMKQKGIAAIEFTIVLPLFLVLILFTAELGRGIYQYSQLTRMIRDAGRHLSQTIITTSNGVPSVLIDENCDYCI SDTTNLLVYGANTGATPLLSGIDITDVSISELPIDSGILVISVDYDWTPIFFDRLSGLGLGDGVDLSFSLNSTYAVRAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17330; Mature: 17330
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNQLYVMKQKGIAAIEFTIVLPLFLVLILFTAELGRGIYQYSQLTRMIRDAGRHLSQTI CCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEE ITTSNGVPSVLIDENCDYCISDTTNLLVYGANTGATPLLSGIDITDVSISELPIDSGILV EEECCCCCEEEEECCCCEEECCCCEEEEEECCCCCCCEECCCCCCCCCHHHCCCCCCEEE ISVDYDWTPIFFDRLSGLGLGDGVDLSFSLNSTYAVRAI EEECCCCCHHHHHHHCCCCCCCCCEEEEECCCEEEEEEC >Mature Secondary Structure MNNQLYVMKQKGIAAIEFTIVLPLFLVLILFTAELGRGIYQYSQLTRMIRDAGRHLSQTI CCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEE ITTSNGVPSVLIDENCDYCISDTTNLLVYGANTGATPLLSGIDITDVSISELPIDSGILV EEECCCCCEEEEECCCCEEECCCCEEEEEECCCCCCCEECCCCCCCCCHHHCCCCCCEEE ISVDYDWTPIFFDRLSGLGLGDGVDLSFSLNSTYAVRAI EEECCCCCHHHHHHHCCCCCCCCCEEEEECCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA