Click here to switch to the map view.

The map label for this gene is hypD2 [H]

Identifier: 167624193

GI number: 167624193

Start: 2752746

End: 2753867

Strand: Direct

Name: hypD2 [H]

Synonym: Shal_2269

Alternate gene names: 167624193

Gene position: 2752746-2753867 (Clockwise)

Preceding gene: 167624192

Following gene: 167624194

Centisome position: 52.66

GC content: 45.63

Gene sequence:

>1122_bases
ATGATAGCCCTAACTGAGCTTTACAAAGGATTCAGAGATCCTGAAGTCATTCGCTCTTTAGCGAAAGAGATTGCCACCTA
CGCAAGTTTGATTGACGGTAATGTTAATATTATGGAGGTCTGCGGCGGACACACCCATACCATCATGAAATATGGTTTAA
ACCAATTATTGCCCGATAATATCGACTTTATCCATGGTCCAGGCTGCCCAGTTTGCATCATGCCTAAAGAGCGTATCGAT
CATGCTGCCGCTCTGGCAAATTTACCAGGTATCATTTTGGTAACGCTAGGCGACATGATCCGTGTTCCTGGCTCTAAAGG
CAGTTTAGCTAACTATCGTGCAAATGGCTGTGATATCAGGCCTATCTATGATCCTCTCGATACCTTACAGATCGCTATCG
ATAACCCTGACAAAACCATTGTTTTCTTTGCGATAGGTTTCGAAACTTCTACTCCTATGACCGCGGTACTTATCGATCAA
GCTGAAAAGCGTGATATAAAAAATCTAGTATTTCATATCAACCATGTACTCGTTCCTCCCGCGATTGATGCTGTGATGGC
CGATCCCAAAGCCAAGGTCAATGCCTTTATTGGGCCAGCACATGTAAGCGTGATTAGTGGCGCAAAGGTCTACCGCCCTG
CGGTGACCAATTACAATACTCCTGTCGTCATATCTGGCTTCGAGCCAGTGGATGTAATGCAGTCAATCTTGATGATTGTT
AAGCAAAAAGCGGCAGCAAAGGCCGAGCTCGAAAACCAGTATAGCCGTTCGGTTTCAGAAGAGGGCAATCTTACAGCCCA
AGCGTTGGTGAACCAATACCTTAAAGTGAGAGAGCATTTCCGTTGGCGGGGTCTTGGCCCAATCCCCTCTTCTGCGTTAA
TGCTAAGAGATGAGTATGCCCATAGAGATGCCGAACGTGTTTTTGCTGAGCATCTTCCAAATGAAGAAATTGACGACCAT
AAAGCCTGTCAATGTGGTGATATTCTCAGAGGCTTATGCAAACCCAAAGACTGCAAGGTGTTTGGCCGAGGATGTACGCC
AGAAACACCATTAGGTAGCTGTATGGTTAGCTCTGAAGGTGCTTGCAACGCATACTATCGCTATAACGGAGTCACAGAAT
GA

Upstream 100 bases:

>100_bases
GTTTCGTTATGAACAAAATTGATAAAGCCGATGCCATGGAAAGTTTGGCTCTATATCGAGAGATTGTTGAAAAACTCGAG
CAAGAACAGCAGGAGTCTTA

Downstream 100 bases:

>100_bases
ATCAAATTAACTCGCGCAAAGTCGTGCAGCTCAGTCATGGCGGTGGCGGTAAAGAGATGAACCACCTGATTAAGGACCTG
TTCTTTAAGGCTTTCGATAA

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MIALTELYKGFRDPEVIRSLAKEIATYASLIDGNVNIMEVCGGHTHTIMKYGLNQLLPDNIDFIHGPGCPVCIMPKERID
HAAALANLPGIILVTLGDMIRVPGSKGSLANYRANGCDIRPIYDPLDTLQIAIDNPDKTIVFFAIGFETSTPMTAVLIDQ
AEKRDIKNLVFHINHVLVPPAIDAVMADPKAKVNAFIGPAHVSVISGAKVYRPAVTNYNTPVVISGFEPVDVMQSILMIV
KQKAAAKAELENQYSRSVSEEGNLTAQALVNQYLKVREHFRWRGLGPIPSSALMLRDEYAHRDAERVFAEHLPNEEIDDH
KACQCGDILRGLCKPKDCKVFGRGCTPETPLGSCMVSSEGACNAYYRYNGVTE

Sequences:

>Translated_373_residues
MIALTELYKGFRDPEVIRSLAKEIATYASLIDGNVNIMEVCGGHTHTIMKYGLNQLLPDNIDFIHGPGCPVCIMPKERID
HAAALANLPGIILVTLGDMIRVPGSKGSLANYRANGCDIRPIYDPLDTLQIAIDNPDKTIVFFAIGFETSTPMTAVLIDQ
AEKRDIKNLVFHINHVLVPPAIDAVMADPKAKVNAFIGPAHVSVISGAKVYRPAVTNYNTPVVISGFEPVDVMQSILMIV
KQKAAAKAELENQYSRSVSEEGNLTAQALVNQYLKVREHFRWRGLGPIPSSALMLRDEYAHRDAERVFAEHLPNEEIDDH
KACQCGDILRGLCKPKDCKVFGRGCTPETPLGSCMVSSEGACNAYYRYNGVTE
>Mature_373_residues
MIALTELYKGFRDPEVIRSLAKEIATYASLIDGNVNIMEVCGGHTHTIMKYGLNQLLPDNIDFIHGPGCPVCIMPKERID
HAAALANLPGIILVTLGDMIRVPGSKGSLANYRANGCDIRPIYDPLDTLQIAIDNPDKTIVFFAIGFETSTPMTAVLIDQ
AEKRDIKNLVFHINHVLVPPAIDAVMADPKAKVNAFIGPAHVSVISGAKVYRPAVTNYNTPVVISGFEPVDVMQSILMIV
KQKAAAKAELENQYSRSVSEEGNLTAQALVNQYLKVREHFRWRGLGPIPSSALMLRDEYAHRDAERVFAEHLPNEEIDDH
KACQCGDILRGLCKPKDCKVFGRGCTPETPLGSCMVSSEGACNAYYRYNGVTE

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=363, Percent_Identity=43.801652892562, Blast_Score=346, Evalue=1e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40907; Mature: 40907

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALTELYKGFRDPEVIRSLAKEIATYASLIDGNVNIMEVCGGHTHTIMKYGLNQLLPDN
CEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC
IDFIHGPGCPVCIMPKERIDHAAALANLPGIILVTLGDMIRVPGSKGSLANYRANGCDIR
CCEEECCCCCEEECCHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCC
PIYDPLDTLQIAIDNPDKTIVFFAIGFETSTPMTAVLIDQAEKRDIKNLVFHINHVLVPP
CCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHEECCC
AIDAVMADPKAKVNAFIGPAHVSVISGAKVYRPAVTNYNTPVVISGFEPVDVMQSILMIV
HHHHHHCCCCHHHHEEECHHHHHHHCCCHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
KQKAAAKAELENQYSRSVSEEGNLTAQALVNQYLKVREHFRWRGLGPIPSSALMLRDEYA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
HRDAERVFAEHLPNEEIDDHKACQCGDILRGLCKPKDCKVFGRGCTPETPLGSCMVSSEG
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEECCCC
ACNAYYRYNGVTE
CCEEEEECCCCCC
>Mature Secondary Structure
MIALTELYKGFRDPEVIRSLAKEIATYASLIDGNVNIMEVCGGHTHTIMKYGLNQLLPDN
CEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC
IDFIHGPGCPVCIMPKERIDHAAALANLPGIILVTLGDMIRVPGSKGSLANYRANGCDIR
CCEEECCCCCEEECCHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCC
PIYDPLDTLQIAIDNPDKTIVFFAIGFETSTPMTAVLIDQAEKRDIKNLVFHINHVLVPP
CCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHEECCC
AIDAVMADPKAKVNAFIGPAHVSVISGAKVYRPAVTNYNTPVVISGFEPVDVMQSILMIV
HHHHHHCCCCHHHHEEECHHHHHHHCCCHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
KQKAAAKAELENQYSRSVSEEGNLTAQALVNQYLKVREHFRWRGLGPIPSSALMLRDEYA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
HRDAERVFAEHLPNEEIDDHKACQCGDILRGLCKPKDCKVFGRGCTPETPLGSCMVSSEG
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEECCCC
ACNAYYRYNGVTE
CCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]