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The map label for this gene is ybfF [C]

Identifier: 167624164

GI number: 167624164

Start: 2716965

End: 2717723

Strand: Direct

Name: ybfF [C]

Synonym: Shal_2240

Alternate gene names: 167624164

Gene position: 2716965-2717723 (Clockwise)

Preceding gene: 167624160

Following gene: 167624165

Centisome position: 51.98

GC content: 45.72

Gene sequence:

>759_bases
ATGCATTATGTGACAAGTGGCCAAGGCCCGGTAGTTATCCTTATACATGGCTTGTTTGGGGATCTTGATAACCTCAAGAC
TTTGGGCAAAGAACTAGAGGAAAACTTCACCGTTGTTCGCATTGATGTACTCAATCACGGCAGCAGCCCGCACGTTGCCA
ATATGAGTTATGAATCGCTGGCCGATAGCATGGCCAAATTGATTGAAGAGCTTAACTGTACAGATGCTATCCTTATTGGT
CACTCCATGGGCGGTAAAATTGCCATGGCAACCGCACTCAAATATCCACAACGTGTTAGCAAGCTTGTCGTTGCGGATAT
TGCGCCAGTAGCCTACCAAAATCGTCATGATAAAGTCTTCGCGGCATTAGAGTCGATGCCGTTACCTGAAATTAAAGATA
GACGCCAAGCGCTCGCCCATATGCAATCTTGGGATATTGATGATGCTACCGCGCAGTTTTTATTAAAGTCTCTTACGCGA
ACAGAGCAAGGTTTTACCTGGAGAATGAACCTAGAGGGACTTAAAGCCAACTACGCGAATATTATTGATTGGCCTCACTT
TAATAGATCCTACCACGGCCCTTGCCTGTTTATTCGTGGGGGGGATTCTGATTACGTGACGGCGGAGCACAGGCAAGCAA
TATTGACACAATTTCCTACAGTAAAGGCTAAAACGATTGAAGGTGCGGGCCACTGGCTACATGCTCAAAAAGCCAGCATT
TTTAACCGCGTAGTCAAAGATTTCATTACAAACGGCTAG

Upstream 100 bases:

>100_bases
TTTTTCGGCACTAAACGGCAACTTAGCCGCCCTTTGTTGGATTTTATCGTAAACCAAGGCACAATCTGCGCCACACAACT
TACTAGTAAGCGGAAAGATA

Downstream 100 bases:

>100_bases
GCCATTTTTCACCGCACAAAGGTGTAAAGCATATAGCCGCTTGAAAACTTATATGGTATATTCGCGCAACTTTTTTTAGC
CTAAGAAAGGAATGGCGAAT

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MHYVTSGQGPVVILIHGLFGDLDNLKTLGKELEENFTVVRIDVLNHGSSPHVANMSYESLADSMAKLIEELNCTDAILIG
HSMGGKIAMATALKYPQRVSKLVVADIAPVAYQNRHDKVFAALESMPLPEIKDRRQALAHMQSWDIDDATAQFLLKSLTR
TEQGFTWRMNLEGLKANYANIIDWPHFNRSYHGPCLFIRGGDSDYVTAEHRQAILTQFPTVKAKTIEGAGHWLHAQKASI
FNRVVKDFITNG

Sequences:

>Translated_252_residues
MHYVTSGQGPVVILIHGLFGDLDNLKTLGKELEENFTVVRIDVLNHGSSPHVANMSYESLADSMAKLIEELNCTDAILIG
HSMGGKIAMATALKYPQRVSKLVVADIAPVAYQNRHDKVFAALESMPLPEIKDRRQALAHMQSWDIDDATAQFLLKSLTR
TEQGFTWRMNLEGLKANYANIIDWPHFNRSYHGPCLFIRGGDSDYVTAEHRQAILTQFPTVKAKTIEGAGHWLHAQKASI
FNRVVKDFITNG
>Mature_252_residues
MHYVTSGQGPVVILIHGLFGDLDNLKTLGKELEENFTVVRIDVLNHGSSPHVANMSYESLADSMAKLIEELNCTDAILIG
HSMGGKIAMATALKYPQRVSKLVVADIAPVAYQNRHDKVFAALESMPLPEIKDRRQALAHMQSWDIDDATAQFLLKSLTR
TEQGFTWRMNLEGLKANYANIIDWPHFNRSYHGPCLFIRGGDSDYVTAEHRQAILTQFPTVKAKTIEGAGHWLHAQKASI
FNRVVKDFITNG

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Homo sapiens, GI23200012, Length=249, Percent_Identity=34.9397590361446, Blast_Score=164, Evalue=7e-41,
Organism=Homo sapiens, GI23200008, Length=249, Percent_Identity=34.9397590361446, Blast_Score=164, Evalue=8e-41,
Organism=Homo sapiens, GI223941839, Length=243, Percent_Identity=29.6296296296296, Blast_Score=130, Evalue=1e-30,
Organism=Escherichia coli, GI1786902, Length=241, Percent_Identity=38.1742738589212, Blast_Score=178, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI17508535, Length=250, Percent_Identity=34.4, Blast_Score=151, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17507063, Length=257, Percent_Identity=27.2373540856031, Blast_Score=102, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6321468, Length=264, Percent_Identity=31.8181818181818, Blast_Score=110, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24640348, Length=258, Percent_Identity=28.2945736434109, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24646055, Length=257, Percent_Identity=24.124513618677, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR012908 [H]

Pfam domain/function: PF00561 Abhydrolase_1; PF07819 PGAP1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 28128; Mature: 28128

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYVTSGQGPVVILIHGLFGDLDNLKTLGKELEENFTVVRIDVLNHGSSPHVANMSYESL
CCCCCCCCCCEEEEEECHHCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHH
ADSMAKLIEELNCTDAILIGHSMGGKIAMATALKYPQRVSKLVVADIAPVAYQNRHDKVF
HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AALESMPLPEIKDRRQALAHMQSWDIDDATAQFLLKSLTRTEQGFTWRMNLEGLKANYAN
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
IIDWPHFNRSYHGPCLFIRGGDSDYVTAEHRQAILTQFPTVKAKTIEGAGHWLHAQKASI
CCCCCCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
FNRVVKDFITNG
HHHHHHHHHCCC
>Mature Secondary Structure
MHYVTSGQGPVVILIHGLFGDLDNLKTLGKELEENFTVVRIDVLNHGSSPHVANMSYESL
CCCCCCCCCCEEEEEECHHCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHH
ADSMAKLIEELNCTDAILIGHSMGGKIAMATALKYPQRVSKLVVADIAPVAYQNRHDKVF
HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
AALESMPLPEIKDRRQALAHMQSWDIDDATAQFLLKSLTRTEQGFTWRMNLEGLKANYAN
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
IIDWPHFNRSYHGPCLFIRGGDSDYVTAEHRQAILTQFPTVKAKTIEGAGHWLHAQKASI
CCCCCCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
FNRVVKDFITNG
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]