| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624125
Identifier: 167624125
GI number: 167624125
Start: 2664663
End: 2665142
Strand: Direct
Name: 167624125
Synonym: Shal_2201
Alternate gene names: NA
Gene position: 2664663-2665142 (Clockwise)
Preceding gene: 167624124
Following gene: 167624126
Centisome position: 50.98
GC content: 43.96
Gene sequence:
>480_bases ATGTCAGCTCCACAACCCTGGTATAAACAGTTCTGGCCTTGGTTTCTGATCATATTGCCATTATGTGCCGTGGTCGCAAG TATCAATTTATTTTGGGTTGCTTTTACCAACCAAGACCCATTGGTTACCGAAGAGTACTATAAAGAAGGTAAAGGCATCA ATATTGACCTTCGCAAGATAAAGCAAGCTAAGCAGCTCGGCATGAACTACCTGCTCGAATTTGATGACAAGTATGTCGAG ATCTCACAGCAAGGCGGTGAAAACTACCTCGCAGCATTGAGCGTTAGCTTCTACCACCCCACTCTCGAAGAGAGGGATTT TTCTCAAATTGTCACTGCAGATGCAAACGGTGTTTACCGCATCGATTTAAATCAAGCCATTGAAGGCCCATGGGAAGTCC GAATTGAAGGTTATGATCAAACCTGGCGTATTCAACAGCGTGTGACATTAAAGGACGATCAGCAATACTGGCTAAACTAA
Upstream 100 bases:
>100_bases AGGCCTTTTTTTAAGTGCTAAATCACAGTTTTATGGGTAAAATATGTGTTCTTTTTTCCCAGCATTTAACAACTATTCTA ATAAGTAAAGGCGGTAAATA
Downstream 100 bases:
>100_bases TTATGCAAAGACCCTGAATGTTGGGGTCGATACCTGCTTTTCGAATATTAATTCAAGTGCCAATTCGAATAATAATAGAA AGAACAAAATCCTATGAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MSAPQPWYKQFWPWFLIILPLCAVVASINLFWVAFTNQDPLVTEEYYKEGKGINIDLRKIKQAKQLGMNYLLEFDDKYVE ISQQGGENYLAALSVSFYHPTLEERDFSQIVTADANGVYRIDLNQAIEGPWEVRIEGYDQTWRIQQRVTLKDDQQYWLN
Sequences:
>Translated_159_residues MSAPQPWYKQFWPWFLIILPLCAVVASINLFWVAFTNQDPLVTEEYYKEGKGINIDLRKIKQAKQLGMNYLLEFDDKYVE ISQQGGENYLAALSVSFYHPTLEERDFSQIVTADANGVYRIDLNQAIEGPWEVRIEGYDQTWRIQQRVTLKDDQQYWLN >Mature_158_residues SAPQPWYKQFWPWFLIILPLCAVVASINLFWVAFTNQDPLVTEEYYKEGKGINIDLRKIKQAKQLGMNYLLEFDDKYVEI SQQGGENYLAALSVSFYHPTLEERDFSQIVTADANGVYRIDLNQAIEGPWEVRIEGYDQTWRIQQRVTLKDDQQYWLN
Specific function: Unknown
COG id: COG3198
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18749; Mature: 18618
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPQPWYKQFWPWFLIILPLCAVVASINLFWVAFTNQDPLVTEEYYKEGKGINIDLRKI CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHCCCCCEEHHHHH KQAKQLGMNYLLEFDDKYVEISQQGGENYLAALSVSFYHPTLEERDFSQIVTADANGVYR HHHHHHCHHHEEECCCCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHEEEECCCCEEE IDLNQAIEGPWEVRIEGYDQTWRIQQRVTLKDDQQYWLN EECHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCC >Mature Secondary Structure SAPQPWYKQFWPWFLIILPLCAVVASINLFWVAFTNQDPLVTEEYYKEGKGINIDLRKI CCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHCCCCCEEHHHHH KQAKQLGMNYLLEFDDKYVEISQQGGENYLAALSVSFYHPTLEERDFSQIVTADANGVYR HHHHHHCHHHEEECCCCEEEEECCCCCCEEEEEEEEEECCCCCCCCCHHEEEECCCCEEE IDLNQAIEGPWEVRIEGYDQTWRIQQRVTLKDDQQYWLN EECHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA