| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624099
Identifier: 167624099
GI number: 167624099
Start: 2628806
End: 2629516
Strand: Direct
Name: 167624099
Synonym: Shal_2175
Alternate gene names: NA
Gene position: 2628806-2629516 (Clockwise)
Preceding gene: 167624098
Following gene: 167624100
Centisome position: 50.29
GC content: 38.12
Gene sequence:
>711_bases ATGCATTTGGACAAAATTGATAAAGAATGGGGATGTATCCATTCTCGTTACCACGACAGCAGCAACGTCAAAGCATGTAT TGTGGCTGTTTCCGATTTAGACAAGATCTCTGAAAAACTAACTTCGTCAGTGCTTGATTCTTCATGGATGCTTGGTCTAG ATAAAGGTACCAGAAGGACTTATGAGTATACAGCTAGAGATACCGCTAATGCTTTAGTGGAGATATTTAAGAAGTTTTCT GATGACCATCAATTAGGTGCTGAGTTTGGTGAAGTTATGGTTTCTATCAGTTCAGCTCGTTCATTATCAGTTATCTTTGA TCATATAGCACTTCCTATCGCCGAGATATGGAAACCTCAGCTCAAACAAAATGAAGGTTTTGATTTCCACACCGAGTGTA CAGAACAGCTAATAAACTTTGGTGAGGCAAAATTTTCTGGGAGTGTAAACCCTCATGGTAAAGCAATACCCCAAGCAGAA GGCTTCATTAATGAAGAAAAGCATTTTAGGGATCGGGTACACTTAGTCAATTTAGCGTCCCAAAAATCTATAGAGAATTT GGATGATGACAAGTTTGGTGCCATAGCTGCATTTTCTATAAATTCAAAAGATCACGATTCAATAATGGATAATGCAATAG AAAGCATTCAGGAGTCTGGACTGTTTGAAAAAGTTCAATGTGCTTACGTTATCGGAGTTGTTGTATGTTAG
Upstream 100 bases:
>100_bases GCTTATAAAAAATATCTAATGCTACTATACACATAATAAATACCTTTGAACGGTTGTAGTTTCAATTTTGAAGCAACCTT TCATATAGATTGGTAAGGTG
Downstream 100 bases:
>100_bases ATATTAAAAGCATTAAGGCAGATGCTCGCCCGCAAGCTAGTGTTGGCGAATTAATAGAAATACTTCATAAAGATGGCCCA GTGGATCGTGAAGTCATACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 236; Mature: 236
Protein sequence:
>236_residues MHLDKIDKEWGCIHSRYHDSSNVKACIVAVSDLDKISEKLTSSVLDSSWMLGLDKGTRRTYEYTARDTANALVEIFKKFS DDHQLGAEFGEVMVSISSARSLSVIFDHIALPIAEIWKPQLKQNEGFDFHTECTEQLINFGEAKFSGSVNPHGKAIPQAE GFINEEKHFRDRVHLVNLASQKSIENLDDDKFGAIAAFSINSKDHDSIMDNAIESIQESGLFEKVQCAYVIGVVVC
Sequences:
>Translated_236_residues MHLDKIDKEWGCIHSRYHDSSNVKACIVAVSDLDKISEKLTSSVLDSSWMLGLDKGTRRTYEYTARDTANALVEIFKKFS DDHQLGAEFGEVMVSISSARSLSVIFDHIALPIAEIWKPQLKQNEGFDFHTECTEQLINFGEAKFSGSVNPHGKAIPQAE GFINEEKHFRDRVHLVNLASQKSIENLDDDKFGAIAAFSINSKDHDSIMDNAIESIQESGLFEKVQCAYVIGVVVC >Mature_236_residues MHLDKIDKEWGCIHSRYHDSSNVKACIVAVSDLDKISEKLTSSVLDSSWMLGLDKGTRRTYEYTARDTANALVEIFKKFS DDHQLGAEFGEVMVSISSARSLSVIFDHIALPIAEIWKPQLKQNEGFDFHTECTEQLINFGEAKFSGSVNPHGKAIPQAE GFINEEKHFRDRVHLVNLASQKSIENLDDDKFGAIAAFSINSKDHDSIMDNAIESIQESGLFEKVQCAYVIGVVVC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26371; Mature: 26371
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLDKIDKEWGCIHSRYHDSSNVKACIVAVSDLDKISEKLTSSVLDSSWMLGLDKGTRRT CCCCHHCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC YEYTARDTANALVEIFKKFSDDHQLGAEFGEVMVSISSARSLSVIFDHIALPIAEIWKPQ EEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH LKQNEGFDFHTECTEQLINFGEAKFSGSVNPHGKAIPQAEGFINEEKHFRDRVHLVNLAS HCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHH QKSIENLDDDKFGAIAAFSINSKDHDSIMDNAIESIQESGLFEKVQCAYVIGVVVC HHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MHLDKIDKEWGCIHSRYHDSSNVKACIVAVSDLDKISEKLTSSVLDSSWMLGLDKGTRRT CCCCHHCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC YEYTARDTANALVEIFKKFSDDHQLGAEFGEVMVSISSARSLSVIFDHIALPIAEIWKPQ EEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH LKQNEGFDFHTECTEQLINFGEAKFSGSVNPHGKAIPQAEGFINEEKHFRDRVHLVNLAS HCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHH QKSIENLDDDKFGAIAAFSINSKDHDSIMDNAIESIQESGLFEKVQCAYVIGVVVC HHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA