| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fabG [C]
Identifier: 167624068
GI number: 167624068
Start: 2583882
End: 2584646
Strand: Direct
Name: fabG [C]
Synonym: Shal_2144
Alternate gene names: 167624068
Gene position: 2583882-2584646 (Clockwise)
Preceding gene: 167624067
Following gene: 167624069
Centisome position: 49.43
GC content: 41.44
Gene sequence:
>765_bases ATGAGTGAACGCTTAGCAGGAAAAGTCGCTTTAATTACAGGTGCAGCCCGAGGTGTTGGTTTAGCAACGGCAAAGTTAAT GGCAAAGGAGGGAGCACAAGTTATTTTCACTGATATAAATGCTGAACAAGGACAAGAGATAGCAAATAGTATCAGCAGTA ATGCGCTTTTTTTAGAGCATGACGTTACCAAAGAGGCTGATTGGTCATCAATACTGACTCATATTAAATCAAAATATGGC CAGCTAAATATATTAGTCAATAACGCGGCAATCTTACAACTAGGTGATATAAAAGAAGAAACCTTAGCAGGATGGCAAAA AGTGCACCGCGTCAATTCAGACAGTGTTTTTCTTGGGATCCATTATGCATTGCCACTAATGGAAGAAAGTGGCGGTGGGT CAATTGTTAATATGTCATCTTCTTCGGCGATTTTTGGTATGCCACATTTTGCAGCCTATGGTGCAAGTAAGGCTGCAATA CGCGGCTTATCTCAAAGTGTTGCAGTTTATTGTTCACAAACCAAAAATAACGTTAGATGCAACACCTTGCATCCTGATTC AATTATGACACCCATGGTAATGGAGATGAGTGCGCAAGCAGGTGACCGCAGCCTAGCAGAGCCTGAACGTGCAAAAGCTT ATCTTTGTCAGCCTGAAGACGTTGCTAATACTATTTTATTTTTAGCTTCTGATGAATCAAAACATATTAATGGTGCCGCT ATTGCGCTAGACGGTGGAGCGACAGTGACTCCACCTTATCTCTAA
Upstream 100 bases:
>100_bases TTATCAACGGTTTCTAGATCATAGGATATTAATTCATCTTGTAATCTTGAGATCCCAATTGGAATGAAATCCCCCTAATT AGTTATTTTGCGAGGAAGAT
Downstream 100 bases:
>100_bases GTTTCTTCGTTTTAGTTACTTAATCAAAAAGAATAATCAATAAAAGAGTAATCAATATGATAACTGAACAATTTGGCTTA GGAGTCGTTTCAAGCTATAT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MSERLAGKVALITGAARGVGLATAKLMAKEGAQVIFTDINAEQGQEIANSISSNALFLEHDVTKEADWSSILTHIKSKYG QLNILVNNAAILQLGDIKEETLAGWQKVHRVNSDSVFLGIHYALPLMEESGGGSIVNMSSSSAIFGMPHFAAYGASKAAI RGLSQSVAVYCSQTKNNVRCNTLHPDSIMTPMVMEMSAQAGDRSLAEPERAKAYLCQPEDVANTILFLASDESKHINGAA IALDGGATVTPPYL
Sequences:
>Translated_254_residues MSERLAGKVALITGAARGVGLATAKLMAKEGAQVIFTDINAEQGQEIANSISSNALFLEHDVTKEADWSSILTHIKSKYG QLNILVNNAAILQLGDIKEETLAGWQKVHRVNSDSVFLGIHYALPLMEESGGGSIVNMSSSSAIFGMPHFAAYGASKAAI RGLSQSVAVYCSQTKNNVRCNTLHPDSIMTPMVMEMSAQAGDRSLAEPERAKAYLCQPEDVANTILFLASDESKHINGAA IALDGGATVTPPYL >Mature_253_residues SERLAGKVALITGAARGVGLATAKLMAKEGAQVIFTDINAEQGQEIANSISSNALFLEHDVTKEADWSSILTHIKSKYGQ LNILVNNAAILQLGDIKEETLAGWQKVHRVNSDSVFLGIHYALPLMEESGGGSIVNMSSSSAIFGMPHFAAYGASKAAIR GLSQSVAVYCSQTKNNVRCNTLHPDSIMTPMVMEMSAQAGDRSLAEPERAKAYLCQPEDVANTILFLASDESKHINGAAI ALDGGATVTPPYL
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=261, Percent_Identity=31.0344827586207, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=32.9411764705882, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=29.6153846153846, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI31542939, Length=251, Percent_Identity=28.2868525896414, Blast_Score=94, Evalue=8e-20, Organism=Homo sapiens, GI126723750, Length=264, Percent_Identity=26.8939393939394, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=31.1284046692607, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI83715985, Length=258, Percent_Identity=30.6201550387597, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI224922801, Length=180, Percent_Identity=31.6666666666667, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI40254992, Length=240, Percent_Identity=27.9166666666667, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4504505, Length=256, Percent_Identity=28.90625, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI126723191, Length=195, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=27.8884462151394, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI109715829, Length=259, Percent_Identity=24.3243243243243, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI59889578, Length=252, Percent_Identity=28.968253968254, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=25.1937984496124, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=27.843137254902, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI142976729, Length=238, Percent_Identity=25.2100840336134, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI10190704, Length=261, Percent_Identity=23.7547892720307, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI40254986, Length=211, Percent_Identity=26.5402843601896, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI40807363, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI302344755, Length=112, Percent_Identity=36.6071428571429, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=32, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=33.203125, Blast_Score=108, Evalue=2e-25, Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=29.5719844357977, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1786812, Length=263, Percent_Identity=30.7984790874525, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=33.4645669291339, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=29.3877551020408, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=31.2, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=26.2096774193548, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=26.0869565217391, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787526, Length=243, Percent_Identity=28.3950617283951, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789378, Length=259, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=25.1968503937008, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787820, Length=230, Percent_Identity=24.3478260869565, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=28.0487804878049, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=32.1428571428571, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=29.0836653386454, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=31.9548872180451, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=33.2075471698113, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=32.0754716981132, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=30.9963099630996, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=31.2, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560332, Length=276, Percent_Identity=30.4347826086957, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI193204405, Length=269, Percent_Identity=30.4832713754647, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=30.3703703703704, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=30.9701492537313, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=31.640625, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17538182, Length=261, Percent_Identity=27.9693486590038, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=29.8507462686567, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=31.9548872180451, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=31.2267657992565, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=29.5880149812734, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=30.2238805970149, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=28.6274509803922, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17563726, Length=278, Percent_Identity=28.7769784172662, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.0380228136882, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=28.90625, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=28.4644194756554, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=29.2134831460674, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17568967, Length=207, Percent_Identity=29.951690821256, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=30.0518134715026, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=29.2134831460674, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193203117, Length=197, Percent_Identity=29.9492385786802, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=27.0161290322581, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=30.0518134715026, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193203115, Length=200, Percent_Identity=29.5, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=28.6274509803922, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71982365, Length=209, Percent_Identity=25.8373205741627, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=29.6875, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=27.5193798449612, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI71997402, Length=169, Percent_Identity=28.9940828402367, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322227, Length=239, Percent_Identity=28.4518828451883, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=32.2709163346614, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=33.0739299610895, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=34.1463414634146, Blast_Score=107, Evalue=8e-24, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=31.7829457364341, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=31.1023622047244, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=30.8, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=29.2490118577075, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24643142, Length=260, Percent_Identity=31.1538461538462, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24640492, Length=189, Percent_Identity=31.2169312169312, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI281364892, Length=187, Percent_Identity=30.4812834224599, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=31.4432989690722, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI24644337, Length=259, Percent_Identity=30.5019305019305, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357673, Length=250, Percent_Identity=26.4, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI21358495, Length=234, Percent_Identity=29.0598290598291, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24649181, Length=194, Percent_Identity=27.319587628866, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI221331218, Length=205, Percent_Identity=27.8048780487805, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24665243, Length=205, Percent_Identity=27.8048780487805, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21356301, Length=228, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24665247, Length=206, Percent_Identity=28.1553398058252, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI221331216, Length=206, Percent_Identity=28.1553398058252, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.51 [H]
Molecular weight: Translated: 26951; Mature: 26820
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERLAGKVALITGAARGVGLATAKLMAKEGAQVIFTDINAEQGQEIANSISSNALFLEH CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEE DVTKEADWSSILTHIKSKYGQLNILVNNAAILQLGDIKEETLAGWQKVHRVNSDSVFLGI CCCCCCCHHHHHHHHHHCCCEEEEEEECEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE HYALPLMEESGGGSIVNMSSSSAIFGMPHFAAYGASKAAIRGLSQSVAVYCSQTKNNVRC EEEEEEEECCCCCCEEEECCCCEEECCCHHHHHCCCHHHHHHHHHHEEEEEECCCCCEEE NTLHPDSIMTPMVMEMSAQAGDRSLAEPERAKAYLCQPEDVANTILFLASDESKHINGAA EEECCCHHHCHHHHHHHHCCCCCCCCCCCHHHEEEECCHHHCCEEEEEECCCCCCCCCEE IALDGGATVTPPYL EEECCCCCCCCCCC >Mature Secondary Structure SERLAGKVALITGAARGVGLATAKLMAKEGAQVIFTDINAEQGQEIANSISSNALFLEH CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEE DVTKEADWSSILTHIKSKYGQLNILVNNAAILQLGDIKEETLAGWQKVHRVNSDSVFLGI CCCCCCCHHHHHHHHHHCCCEEEEEEECEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE HYALPLMEESGGGSIVNMSSSSAIFGMPHFAAYGASKAAIRGLSQSVAVYCSQTKNNVRC EEEEEEEECCCCCCEEEECCCCEEECCCHHHHHCCCHHHHHHHHHHEEEEEECCCCCEEE NTLHPDSIMTPMVMEMSAQAGDRSLAEPERAKAYLCQPEDVANTILFLASDESKHINGAA EEECCCHHHCHHHHHHHHCCCCCCCCCCCHHHEEEECCHHHCCEEEEEECCCCCCCCCEE IALDGGATVTPPYL EEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8382516; 2026158; 8617258 [H]