Click here to switch to the map view.

The map label for this gene is yngJ [H]

Identifier: 167624035

GI number: 167624035

Start: 2543496

End: 2544623

Strand: Direct

Name: yngJ [H]

Synonym: Shal_2111

Alternate gene names: 167624035

Gene position: 2543496-2544623 (Clockwise)

Preceding gene: 167624034

Following gene: 167624036

Centisome position: 48.66

GC content: 44.15

Gene sequence:

>1128_bases
ATGGATTTTTCATTAACTGAAGAGCAGCAAGCTATCTTTGAAATGTCTCAGGGAGTATTTAACGATTGCTGTACGGATGA
ATATCTTCGCGAAGTCGACGTTTCCAATAACACCAGAATGGATAAATTGTGGCAAACCTGTATTGAAACCGGACTCCATG
CTCTGTATTTGCCAGAAGAGTTTGGCGGAAGTGAACTTGGAATGACAGAGCTTGCGTTAGTGCTGCAAGCACAAGGTGCA
GCATTAGGTTTGGTACCATTATGGCGTCATCAGTTAGCCGCAACCTGTTTAGCTAAGTTTGGTGCTGCAGATTTACATCC
AGTTATCAACGCCGCTGCGACAGCAGATAATTTACTAACGCTCAGCGTTCCCAATCTAACCAAGCATAATGTGTCCGTTA
AAGCCGCACCAAATAAAGAAAATGGCTATGTACTGAACGGAAAGTTATCTGCTGTTGCAGATGCGGCAACGGCAAGCCAT
GTACTGATACCGGTTGAACTTGATAACCAAGTACGCTTTGCACTTGTGTCGCTCGACGGTATCAATATTAAACGTATCGA
CGGGATATTAACCCATGGCGAACAGGTTTCCGATCTGGTTTTTAATGAAAGTGTACTCTCAGGCTACCAATTACTGTCAA
CGGGAGCGAGTGAATGGCTAACACCAAGAGTACTCGCTGCTCAGTCAGCAATTCAGCTTGGAGTGAGTGAAGAACAATTA
AAAAGAACCGTTGAATATATCTGTGAGCGTCGTCAATTTGATCGACAGATTGGATCATTTCAAGCCGTTCAAATGACAAT
GGCTGATTGTCGTATTGCATTAGAAGTGCTGCGTTCAACATTATTTCAGCTTTGCTATCGAATCGACGCCGGCTTAGGTT
GTGACTCGGAAGCTTTAGCATGTGCATTGCATGCTTGTGATGCCGGCCACTTAATCGGTCATAAAGCGCAACATGTTCAT
GGCGGTTTTGGTGTTGATACGAGTTATCCAATACATCGTTATTTGTATTGGAGCCGCGCAATATCACTAGGACTGGGTGG
TAGCCAAGCAATCGCCGAGCGGTTAGGTGACTGGTTAGCAGAAAATGACAAACTTGGATGGAAGTATGACCTCAATGAAA
ACAACTAA

Upstream 100 bases:

>100_bases
GGTCGTTATTGGTCAAAAGGTAGAGGTAGAGTTTACCACTTACGACGGTGATTTAACCCTACCTATGTTTAAACTGGTAA
CCGAATAAAGGAGGTAGGTT

Downstream 100 bases:

>100_bases
TACTAAAAACAGTGCGGCTAGCAACTTTTCAAATATAAAGCTCGGTGAAAAATTACCAGAACTTACTGTACCTATTACTG
TTGCCTTGATCACTAGTGGC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MDFSLTEEQQAIFEMSQGVFNDCCTDEYLREVDVSNNTRMDKLWQTCIETGLHALYLPEEFGGSELGMTELALVLQAQGA
ALGLVPLWRHQLAATCLAKFGAADLHPVINAAATADNLLTLSVPNLTKHNVSVKAAPNKENGYVLNGKLSAVADAATASH
VLIPVELDNQVRFALVSLDGINIKRIDGILTHGEQVSDLVFNESVLSGYQLLSTGASEWLTPRVLAAQSAIQLGVSEEQL
KRTVEYICERRQFDRQIGSFQAVQMTMADCRIALEVLRSTLFQLCYRIDAGLGCDSEALACALHACDAGHLIGHKAQHVH
GGFGVDTSYPIHRYLYWSRAISLGLGGSQAIAERLGDWLAENDKLGWKYDLNENN

Sequences:

>Translated_375_residues
MDFSLTEEQQAIFEMSQGVFNDCCTDEYLREVDVSNNTRMDKLWQTCIETGLHALYLPEEFGGSELGMTELALVLQAQGA
ALGLVPLWRHQLAATCLAKFGAADLHPVINAAATADNLLTLSVPNLTKHNVSVKAAPNKENGYVLNGKLSAVADAATASH
VLIPVELDNQVRFALVSLDGINIKRIDGILTHGEQVSDLVFNESVLSGYQLLSTGASEWLTPRVLAAQSAIQLGVSEEQL
KRTVEYICERRQFDRQIGSFQAVQMTMADCRIALEVLRSTLFQLCYRIDAGLGCDSEALACALHACDAGHLIGHKAQHVH
GGFGVDTSYPIHRYLYWSRAISLGLGGSQAIAERLGDWLAENDKLGWKYDLNENN
>Mature_375_residues
MDFSLTEEQQAIFEMSQGVFNDCCTDEYLREVDVSNNTRMDKLWQTCIETGLHALYLPEEFGGSELGMTELALVLQAQGA
ALGLVPLWRHQLAATCLAKFGAADLHPVINAAATADNLLTLSVPNLTKHNVSVKAAPNKENGYVLNGKLSAVADAATASH
VLIPVELDNQVRFALVSLDGINIKRIDGILTHGEQVSDLVFNESVLSGYQLLSTGASEWLTPRVLAAQSAIQLGVSEEQL
KRTVEYICERRQFDRQIGSFQAVQMTMADCRIALEVLRSTLFQLCYRIDAGLGCDSEALACALHACDAGHLIGHKAQHVH
GGFGVDTSYPIHRYLYWSRAISLGLGGSQAIAERLGDWLAENDKLGWKYDLNENN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=373, Percent_Identity=22.5201072386059, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI226958414, Length=335, Percent_Identity=22.6865671641791, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356377, Length=321, Percent_Identity=23.6760124610592, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 41006; Mature: 41006

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFSLTEEQQAIFEMSQGVFNDCCTDEYLREVDVSNNTRMDKLWQTCIETGLHALYLPEE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCHH
FGGSELGMTELALVLQAQGAALGLVPLWRHQLAATCLAKFGAADLHPVINAAATADNLLT
CCCCCCCHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE
LSVPNLTKHNVSVKAAPNKENGYVLNGKLSAVADAATASHVLIPVELDNQVRFALVSLDG
EECCCCCCCCEEEEECCCCCCCEEEECCHHHHHHHCCCCEEEEEEEECCCEEEEEEEECC
INIKRIDGILTHGEQVSDLVFNESVLSGYQLLSTGASEWLTPRVLAAQSAIQLGVSEEQL
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCCHHHH
KRTVEYICERRQFDRQIGSFQAVQMTMADCRIALEVLRSTLFQLCYRIDAGLGCDSEALA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
CALHACDAGHLIGHKAQHVHGGFGVDTSYPIHRYLYWSRAISLGLGGSQAIAERLGDWLA
HHHHHCCCCCHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ENDKLGWKYDLNENN
CCCCCCEEECCCCCC
>Mature Secondary Structure
MDFSLTEEQQAIFEMSQGVFNDCCTDEYLREVDVSNNTRMDKLWQTCIETGLHALYLPEE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCHH
FGGSELGMTELALVLQAQGAALGLVPLWRHQLAATCLAKFGAADLHPVINAAATADNLLT
CCCCCCCHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE
LSVPNLTKHNVSVKAAPNKENGYVLNGKLSAVADAATASHVLIPVELDNQVRFALVSLDG
EECCCCCCCCEEEEECCCCCCCEEEECCHHHHHHHCCCCEEEEEEEECCCEEEEEEEECC
INIKRIDGILTHGEQVSDLVFNESVLSGYQLLSTGASEWLTPRVLAAQSAIQLGVSEEQL
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCCHHHH
KRTVEYICERRQFDRQIGSFQAVQMTMADCRIALEVLRSTLFQLCYRIDAGLGCDSEALA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
CALHACDAGHLIGHKAQHVHGGFGVDTSYPIHRYLYWSRAISLGLGGSQAIAERLGDWLA
HHHHHCCCCCHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ENDKLGWKYDLNENN
CCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]