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The map label for this gene is xerD [H]

Identifier: 167623993

GI number: 167623993

Start: 2490977

End: 2492092

Strand: Reverse

Name: xerD [H]

Synonym: Shal_2067

Alternate gene names: 167623993

Gene position: 2492092-2490977 (Counterclockwise)

Preceding gene: 167623995

Following gene: 167623989

Centisome position: 47.68

GC content: 44.71

Gene sequence:

>1116_bases
ATGAATTCGGAACAACAATGTCCTAAGCAAGTACCCTCTTTGAATGAACAAGAGCATGCATTAGGTCACTTTAGTGGGGG
CTTAACTAACGGCCACAGTACCCAACACGCTCCGAGTCAGAATCCCAATGAAAAGTTTTTCCAAGAGCAACAACTTCCCA
TCTCGATCTTGGATGATTACAAGAGCGCGGCCAGTGAGACTCAATATGAGATCTCGGACAATACCCGACGAGTCTATCGT
TCCAGCTTCGCTATTTTTAGAAATTATTGCGATCAACATAATCTAAGTGCCCTGCCCGCCGATCCTCGGAGTGTGATTTC
TTTCATCGGTCATCAAAAAGAAATTTATCAGGAAAAGAGCGGCCACCAGCTATCTAAGCAAACGATTAATACACGTTTGG
CGGCAATACGTTTTTTCCATATTCAAGCCGCACATCATTCACCGACTGAACACCCCCTTGTGATCAGGGTGATGCGTGGT
CTGATGCGAAACCAATATCGACAGATCTCAGACTATGATCAGCAACCGATCACCTATGATGAGCTGGAAATGTTGTTGGA
TGTGATCGAGCGACAGCCGCAACAGTTAACCCGATTGCGGGATAAAGCGATTTTACAGCTTGGGTTACAGGGGGGATTTC
GACGTTCTGAATTAGCGGAGATACGAGTCGAACATATTAGCTTCTTAAGAGAAAAGCTTAAGGTGCGCGTACCCTATTCT
AAAAGTAATCAGCAAGGCCAAAGAGAGTGGAAAGATCTGCCGAAACAGGAACTGTTTTCTGCCTATGAAGCGGTTCAACA
ATGGCTTGATGCCACCAAGATAAAACAGGGACACCTATTCCGATCCTTGAGCCGTGATGGCAATTCGGTTCGAGATTATC
AGATCACTCAAGCCAAAATGGGTAAAGGCTTTTTAAAGGGCGACGATATTTATCAGATGATAAAAAAATACTGTGACAAG
GCGGGACTAAATTCTCGATTCTATGGTGCACACAGTTTACGAAGTGGCTGCGTCACCCAGCTCCATGAAAATGATAAAGA
CCATCTCTATATCATGGCAAGAACCGGGCATACCGATCCGAGATCATTGAGGCATTACTTGAAGCCAAAGGATTAA

Upstream 100 bases:

>100_bases
ACGATTATCACTGGTAGAGATAAGGGTTTTTAAGTAGAATATCCGACGTTAAATGACGGATTTAACGCCACTTTATTAGA
TTATAGGTCAGCAAAAAAAG

Downstream 100 bases:

>100_bases
AGCTGCTTAAAGCTTCAGTCATCCTTTAGTTTGAAGCTTGAATTTACAGTTAAAAATTTCACTTAAATTTTTGGTTTTTA
TTTTAGCTTTTGGGTTTTCG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MNSEQQCPKQVPSLNEQEHALGHFSGGLTNGHSTQHAPSQNPNEKFFQEQQLPISILDDYKSAASETQYEISDNTRRVYR
SSFAIFRNYCDQHNLSALPADPRSVISFIGHQKEIYQEKSGHQLSKQTINTRLAAIRFFHIQAAHHSPTEHPLVIRVMRG
LMRNQYRQISDYDQQPITYDELEMLLDVIERQPQQLTRLRDKAILQLGLQGGFRRSELAEIRVEHISFLREKLKVRVPYS
KSNQQGQREWKDLPKQELFSAYEAVQQWLDATKIKQGHLFRSLSRDGNSVRDYQITQAKMGKGFLKGDDIYQMIKKYCDK
AGLNSRFYGAHSLRSGCVTQLHENDKDHLYIMARTGHTDPRSLRHYLKPKD

Sequences:

>Translated_371_residues
MNSEQQCPKQVPSLNEQEHALGHFSGGLTNGHSTQHAPSQNPNEKFFQEQQLPISILDDYKSAASETQYEISDNTRRVYR
SSFAIFRNYCDQHNLSALPADPRSVISFIGHQKEIYQEKSGHQLSKQTINTRLAAIRFFHIQAAHHSPTEHPLVIRVMRG
LMRNQYRQISDYDQQPITYDELEMLLDVIERQPQQLTRLRDKAILQLGLQGGFRRSELAEIRVEHISFLREKLKVRVPYS
KSNQQGQREWKDLPKQELFSAYEAVQQWLDATKIKQGHLFRSLSRDGNSVRDYQITQAKMGKGFLKGDDIYQMIKKYCDK
AGLNSRFYGAHSLRSGCVTQLHENDKDHLYIMARTGHTDPRSLRHYLKPKD
>Mature_371_residues
MNSEQQCPKQVPSLNEQEHALGHFSGGLTNGHSTQHAPSQNPNEKFFQEQQLPISILDDYKSAASETQYEISDNTRRVYR
SSFAIFRNYCDQHNLSALPADPRSVISFIGHQKEIYQEKSGHQLSKQTINTRLAAIRFFHIQAAHHSPTEHPLVIRVMRG
LMRNQYRQISDYDQQPITYDELEMLLDVIERQPQQLTRLRDKAILQLGLQGGFRRSELAEIRVEHISFLREKLKVRVPYS
KSNQQGQREWKDLPKQELFSAYEAVQQWLDATKIKQGHLFRSLSRDGNSVRDYQITQAKMGKGFLKGDDIYQMIKKYCDK
AGLNSRFYGAHSLRSGCVTQLHENDKDHLYIMARTGHTDPRSLRHYLKPKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43095; Mature: 43095

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSEQQCPKQVPSLNEQEHALGHFSGGLTNGHSTQHAPSQNPNEKFFQEQQLPISILDDY
CCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
KSAASETQYEISDNTRRVYRSSFAIFRNYCDQHNLSALPADPRSVISFIGHQKEIYQEKS
HHHHHCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHC
GHQLSKQTINTRLAAIRFFHIQAAHHSPTEHPLVIRVMRGLMRNQYRQISDYDQQPITYD
CCHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ELEMLLDVIERQPQQLTRLRDKAILQLGLQGGFRRSELAEIRVEHISFLREKLKVRVPYS
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCC
KSNQQGQREWKDLPKQELFSAYEAVQQWLDATKIKQGHLFRSLSRDGNSVRDYQITQAKM
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
GKGFLKGDDIYQMIKKYCDKAGLNSRFYGAHSLRSGCVTQLHENDKDHLYIMARTGHTDP
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH
RSLRHYLKPKD
HHHHHHCCCCC
>Mature Secondary Structure
MNSEQQCPKQVPSLNEQEHALGHFSGGLTNGHSTQHAPSQNPNEKFFQEQQLPISILDDY
CCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
KSAASETQYEISDNTRRVYRSSFAIFRNYCDQHNLSALPADPRSVISFIGHQKEIYQEKS
HHHHHCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHC
GHQLSKQTINTRLAAIRFFHIQAAHHSPTEHPLVIRVMRGLMRNQYRQISDYDQQPITYD
CCHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ELEMLLDVIERQPQQLTRLRDKAILQLGLQGGFRRSELAEIRVEHISFLREKLKVRVPYS
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCC
KSNQQGQREWKDLPKQELFSAYEAVQQWLDATKIKQGHLFRSLSRDGNSVRDYQITQAKM
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
GKGFLKGDDIYQMIKKYCDKAGLNSRFYGAHSLRSGCVTQLHENDKDHLYIMARTGHTDP
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH
RSLRHYLKPKD
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]