| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is fadH [H]
Identifier: 167623976
GI number: 167623976
Start: 2472729
End: 2473535
Strand: Direct
Name: fadH [H]
Synonym: Shal_2050
Alternate gene names: 167623976
Gene position: 2472729-2473535 (Clockwise)
Preceding gene: 167623975
Following gene: 167623977
Centisome position: 47.31
GC content: 47.09
Gene sequence:
>807_bases ATGTTTAGCTATCAAGGAAAGAATGTTGTCGTTGTTGGCGGTACCAGTGGCATAAACTTAGGTATCGCTATTCGCTTCTC TCAGGCTGGTGCGAATGTGGCTGTTGCGAGTCGCAGTGAAACTAAAGTTAATGCTGCTGTTGAGCAGTTAAAACTCGCTA ACCCAGAAGGTAAGCACTTAGGCGTCTGTTTTGACGTAAGAGATCTTGAAGCGTTAAAACTAGGTTTTGCCGTCATTGCC GACTCATTTTCGCACATTGATGTTTTAGTGAGTGGGGCAGCGGGTAACTTTCCGTCATCGGCTGAAAAGCTGTCAGAAAA TGGCTTTAAGTCAGTCATGGATATCGACCTTCTAGGAAGCTTTCAGGTGCTTAAGCAAGGTTTTCCACTGATTAAAGAGC AGGGCGGTGCCATCATTCAGATCTCAGCGCCGCAAGCATTCGTGCCAATGCCTATGCAGGTACACGTTTGTGCTGCTAAA GCTGGCGTCGATATGTTAACTAAGACATTAGCGATAGAGTGGGGCTGTAAAGGCATTCGGATCAATTCTATCGTTCCAGG ACCGATTGCTGGTACAGAAGGATTTGATAGGTTAGCTCCTAGTGCAGAGTTACAGGCTCATGTTGCCAAAGGTGTCCCTT TAAGGCGTAACGGTAGTTGTGACGATATTGCCAATGCAGCATTATTTCTAGCATCTGATATGGCGTCTTACATCACGGGT GCTGTATTACCCGTTGATGGTGGTTGGTCACTTGGTGGCGCGGGCGCCGCTATTGCCGAGATAGGCCAATTAGCTAGACG CAACTAA
Upstream 100 bases:
>100_bases AGCAATCCATCAAACGATTGCATAAATTGCTTTCGCCTTGTAGGTTATATTTATCTTGGCATTAATGGCCTTAAAATATG ACCTATAGGGAAAAGTCGCA
Downstream 100 bases:
>100_bases GCAACAAATAAGTAAAAAATAACTAACATTAGAGTAATTGTTAAATTAGAGATTTATAGATATGGCAAATCCATTTCAAG AGCAGCTGTTAAAAGCTGGT
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MFSYQGKNVVVVGGTSGINLGIAIRFSQAGANVAVASRSETKVNAAVEQLKLANPEGKHLGVCFDVRDLEALKLGFAVIA DSFSHIDVLVSGAAGNFPSSAEKLSENGFKSVMDIDLLGSFQVLKQGFPLIKEQGGAIIQISAPQAFVPMPMQVHVCAAK AGVDMLTKTLAIEWGCKGIRINSIVPGPIAGTEGFDRLAPSAELQAHVAKGVPLRRNGSCDDIANAALFLASDMASYITG AVLPVDGGWSLGGAGAAIAEIGQLARRN
Sequences:
>Translated_268_residues MFSYQGKNVVVVGGTSGINLGIAIRFSQAGANVAVASRSETKVNAAVEQLKLANPEGKHLGVCFDVRDLEALKLGFAVIA DSFSHIDVLVSGAAGNFPSSAEKLSENGFKSVMDIDLLGSFQVLKQGFPLIKEQGGAIIQISAPQAFVPMPMQVHVCAAK AGVDMLTKTLAIEWGCKGIRINSIVPGPIAGTEGFDRLAPSAELQAHVAKGVPLRRNGSCDDIANAALFLASDMASYITG AVLPVDGGWSLGGAGAAIAEIGQLARRN >Mature_268_residues MFSYQGKNVVVVGGTSGINLGIAIRFSQAGANVAVASRSETKVNAAVEQLKLANPEGKHLGVCFDVRDLEALKLGFAVIA DSFSHIDVLVSGAAGNFPSSAEKLSENGFKSVMDIDLLGSFQVLKQGFPLIKEQGGAIIQISAPQAFVPMPMQVHVCAAK AGVDMLTKTLAIEWGCKGIRINSIVPGPIAGTEGFDRLAPSAELQAHVAKGVPLRRNGSCDDIANAALFLASDMASYITG AVLPVDGGWSLGGAGAAIAEIGQLARRN
Specific function: Auxiliary enzyme of beta-oxidation. It participates in the metabolism of unsaturated fatty enoyl-CoA esters having double bonds in both even- and odd-numbered positions. Catalyzes the NADP-dependent reduction of 2,4-dienoyl-CoA to yield trans-3- enoyl-CoA
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family. 2,4-dienoyl-CoA reductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=43.4262948207171, Blast_Score=168, Evalue=4e-42, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=33.9920948616601, Blast_Score=139, Evalue=3e-33, Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=37.5, Blast_Score=136, Evalue=2e-32, Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=33.8645418326693, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=26.5873015873016, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI5031737, Length=242, Percent_Identity=29.7520661157025, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=29.004329004329, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI15277342, Length=247, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=28.8065843621399, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=28.2868525896414, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=9e-13, Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=28.740157480315, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=29.7709923664122, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=30.2788844621514, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=28.515625, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=29.5546558704453, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=28.0155642023346, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=28.0155642023346, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=26, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=28.0487804878049, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=26.2745098039216, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787545, Length=259, Percent_Identity=27.027027027027, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=25.3012048192771, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1789057, Length=250, Percent_Identity=24.8, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=33.201581027668, Blast_Score=127, Evalue=8e-30, Organism=Caenorhabditis elegans, GI17561272, Length=237, Percent_Identity=34.1772151898734, Blast_Score=120, Evalue=6e-28, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=34.1085271317829, Blast_Score=120, Evalue=7e-28, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=30.8943089430894, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=28.1746031746032, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=32.03125, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI72000259, Length=271, Percent_Identity=29.1512915129151, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=25.8426966292135, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=26.6129032258064, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=26.6917293233083, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=31.25, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17562904, Length=273, Percent_Identity=27.1062271062271, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=26.1904761904762, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=26.0377358490566, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=24.7191011235955, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=27.4074074074074, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=26.3940520446097, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=26.5682656826568, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=24.4444444444444, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=26.2172284644195, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=23.7037037037037, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=25.0950570342205, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=24.0601503759398, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=24.6212121212121, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=26.2962962962963, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=40.4761904761905, Blast_Score=160, Evalue=2e-40, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=31.2252964426877, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=28.7937743190661, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=28.4, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=29.6442687747036, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=28.0632411067194, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=27.0588235294118, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=30.3149606299213, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=28.6290322580645, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21356301, Length=216, Percent_Identity=25.9259259259259, Blast_Score=68, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.3.1.34 [H]
Molecular weight: Translated: 27716; Mature: 27716
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSYQGKNVVVVGGTSGINLGIAIRFSQAGANVAVASRSETKVNAAVEQLKLANPEGKHL CCCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEE GVCFDVRDLEALKLGFAVIADSFSHIDVLVSGAAGNFPSSAEKLSENGFKSVMDIDLLGS EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHEEHHHCCC FQVLKQGFPLIKEQGGAIIQISAPQAFVPMPMQVHVCAAKAGVDMLTKTLAIEWGCKGIR HHHHHCCCCCEECCCCEEEEEECCCCCCCCCEEEEEEEHHHCHHHHHHHHHHEECCCEEE INSIVPGPIAGTEGFDRLAPSAELQAHVAKGVPLRRNGSCDDIANAALFLASDMASYITG ECCCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC AVLPVDGGWSLGGAGAAIAEIGQLARRN EEEECCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MFSYQGKNVVVVGGTSGINLGIAIRFSQAGANVAVASRSETKVNAAVEQLKLANPEGKHL CCCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEE GVCFDVRDLEALKLGFAVIADSFSHIDVLVSGAAGNFPSSAEKLSENGFKSVMDIDLLGS EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHEEHHHCCC FQVLKQGFPLIKEQGGAIIQISAPQAFVPMPMQVHVCAAKAGVDMLTKTLAIEWGCKGIR HHHHHCCCCCEECCCCEEEEEECCCCCCCCCEEEEEEEHHHCHHHHHHHHHHEECCCEEE INSIVPGPIAGTEGFDRLAPSAELQAHVAKGVPLRRNGSCDDIANAALFLASDMASYITG ECCCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC AVLPVDGGWSLGGAGAAIAEIGQLARRN EEEECCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]