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The map label for this gene is ihfB [H]

Identifier: 167623972

GI number: 167623972

Start: 2469999

End: 2470286

Strand: Direct

Name: ihfB [H]

Synonym: Shal_2046

Alternate gene names: 167623972

Gene position: 2469999-2470286 (Clockwise)

Preceding gene: 167623971

Following gene: 167623973

Centisome position: 47.26

GC content: 46.53

Gene sequence:

>288_bases
ATGACTAAATCCGAACTAATCGAAAAACTTGCCACTAGGCAGTCGCAGCTGTCTGCGAAAGAAGTGGAAGCCGCTATCAA
AGAAATGTTGGAGCAAATGGCCGATACATTAGAAGCTGGAGATCGAATCGAGATCCGTGGATTTGGTAGTTTCTCACTTC
ATTATCGTGCACCACGCACTGGCCGTAACCCAAAGACTGGTACTTCAGTCGAATTGGAAGGCAAGTATGTACCGCACTTT
AAGCCAGGCAAAGAACTGCGCGAACGTGTTGATGCAATCAACACGTAA

Upstream 100 bases:

>100_bases
TGAAGCGTTCAAAGCAGCTCGTAAATAATCGCCTTGACGTTCAGGGGTGCTTGCACCCCTAAAAGGTGACTGTGTTTGGC
TTGATAATAGAGGGTATAGG

Downstream 100 bases:

>100_bases
TTTACATTGTATTAAAAGCCTCCATTAGGAGGCTTTTTTATACCTAAAACTTAGGTATAGCTAGCTAGTTCGCTCTTTTT
CTAAGATAATCAAAGCTTAT

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MTKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLEAGDRIEIRGFGSFSLHYRAPRTGRNPKTGTSVELEGKYVPHF
KPGKELRERVDAINT

Sequences:

>Translated_95_residues
MTKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLEAGDRIEIRGFGSFSLHYRAPRTGRNPKTGTSVELEGKYVPHF
KPGKELRERVDAINT
>Mature_94_residues
TKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLEAGDRIEIRGFGSFSLHYRAPRTGRNPKTGTSVELEGKYVPHFK
PGKELRERVDAINT

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=80.2197802197802, Blast_Score=153, Evalue=2e-39,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=37.7777777777778, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=36.2637362637363, Blast_Score=73, Evalue=5e-15,
Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=34.0659340659341, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10690; Mature: 10559

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLEAGDRIEIRGFGSFSLHYRAPRT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC
GRNPKTGTSVELEGKYVPHFKPGKELRERVDAINT
CCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
TKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLEAGDRIEIRGFGSFSLHYRAPRT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC
GRNPKTGTSVELEGKYVPHFKPGKELRERVDAINT
CCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA