| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is gyrA [H]
Identifier: 167623965
GI number: 167623965
Start: 2458757
End: 2461483
Strand: Direct
Name: gyrA [H]
Synonym: Shal_2039
Alternate gene names: 167623965
Gene position: 2458757-2461483 (Clockwise)
Preceding gene: 167623958
Following gene: 167623967
Centisome position: 47.04
GC content: 45.07
Gene sequence:
>2727_bases ATGACTGATCTGGCTTCATCTATAACACCAATTAATATTGAAGACGAATTAAAGAATTCATACTTAGATTACGCCATGAG CGTAATCGTTGGCCGTGCACTGCCTGACGTTCGTGACGGTTTAAAACCGGTACATCGCCGCGTACTATTCGCCATGAGCG AATTGAAAAACGACTGGAACAAGCCTTATAAAAAGTCTGCTCGTGTCGTTGGTGACGTAATCGGTAAGTATCACCCACAT GGTGATACAGCTGTATATGACACAATCGTTCGTTTGGCTCAGCCTTTCTCTATGCGCTACCCACTTATCGACGGTCAAGG TAACTTCGGTTCTGTTGACGGCGATGCGGCGGCAGCAATGCGTTATACCGAAATCCGTATGGACAAGGTGGCACATCAGC TTTTAGCCGATCTTGAGAAAGAGACCGTTGACTTCGTTCCAAACTACGATGGCACCGAGTTTATTCCTGCCGTTCTACCA ACACGCATTCCAACACTACTCGTGAATGGTTCGTCAGGTATTGCGGTTGGTATGGCTACAAACATTCCACCACATAACAT AAACGAAGTTATCAGCGGTTGTTTAGCGCTAATTGAAGACCCAGCATTATCTATCGAACAGTTGATGGAATACATTCCGG GTCCTGACTTCCCAACGGCTGCGATTATCAATGGCCGTAAAGGCATTATTGATGCGTATAAGACTGGCCGTGGCCGTGCT GTTATGCGTTCTCGTGCCGAGATTGAGGAAGAGAATGGCCGTGAGCGTATTATTGTTCACGAAATTCCATATCAAGTTAA CAAAGCGCGTTTGATTGAAAAAATCGCCGAGCTTGTTAAAGACAAAAAGATCGAAGGCATTAGTGGTCTACGCGACGAAT CAGATAAAGACGGTATGCGTATCGTTATCGAGATTAAGCGTGGTGAAGTGGGTGAGGTTGTTCTTAATAACCTTTACGCA CAGACTCAAATGCAGTGCTCTTTTGGTATTAACATGGTTGCTCTGACCAATGGTCAGCCAAAACTGTTTAACCTAAAAGA GATGCTAGAGTGCTTTATTCTTCACCGTCGCGAAGTGGTTACGCGTCGTACCGTATTTGAATTACGTAAAGCACGTGAAC GCGCACATATTCTTGAAGCGTTAGCGGTAGCCTTAGCAAACATCGACCCAATTATTGCCTTGATTAAAGCCTCACCAACT CCAGCTGAAGCGAAAGTTAAGCTAGTTGCAGAAGGTTGGGAACTTGGCCACGTGAAAGGCATGCTTGAGAAAGCTGGTGA TGACGCGGCGCGCCCTGAATGGCTAGAGCCTGAATTTGGTATTCGCGACGATAAGTACTACCTGACTGAGCAACAAGCAC AAGCAATTCTAGAGTTACGTCTACACCGTTTAACCGGTCTAGAACATGACAAGATCATTGCAGAATACGAAGAGCTACTA GAAATCATCGCGGCACTACTATTCATTCTTGGTAGTCCTCAGCGTTTGATGGAAGTGATTAAAGAAGAACTTGAAGAAGT TCTAGCAAACTTTGGTGATGAGCGTCGTACCGTTATTAATGCTAACGAAGTTGATATGAGTCTTGAAGACCTTATCAATG AAGAAGACGTTGTAGTAACGCTGTCTCACTTAGGCTATGCCAAGTACCAAGTACTGTCTGATTACCAAGCTCAGCGCCGT GGTGGTAAGGGCAAAGCAGCGACTAAAGTGAAAGACGAAGATTTCGTTGAGAAACTATTGGTCGCTAACACTCATGACAC CATCTTGTGCTTCTCTGACTTTGGTAAGATGTACTGGTTAAAAGTTTACCAGTTACCATTGGCTAGTCGTACTGCTCGTG GTCGTCCAATCGTTAACTTATTGCCATTGGCAGAAGGTGAGCGTATTACTGCGATTCTACCTGTTCGTGAATATGCTGAA GATAAGTACATTATCATGGCAACGTCTCACGGTACGGTTAAGAAGACTGCATTGACGGCTTATAGCAACCCACGTGCAAA CGGTATTATTGCCGTTAACCTTAAAGATGGCGATCAGCTAATTGGTGTTGATATTACTGACGGTAATAACGATATCATGC TGTTCTCTAACGAAGGTAAAGTGGTTCGCTTTAACGAGAAAGCCCGTAGCTCTGAAACTGGTGAAGTTAAGATCGATCCT GAGACAGGTGAAGAAGTTATCGCACTACGTGCGATGGGACGTACTGCAACGGGCGTTCGCGGTATTAAGCTTGAAGACGG CCAAACTGTTGTATCGCTAATTGTACCTAAGGGCGAGGGCGATATCTTAACTGTGACTGAGAACGGTTATGGTAAGCGTA CCGATTTAGCTGAATATCCAGCGAAGAGCCGTGGTACTAAAGGTGTTGTCTCTATCAAGGTTAGCGAACGTAACGGCGCC GTAGTCGGTGCAGTACAAGTTGGCGAAAATGATGAGATCATGCTGATCAGTAACAAGGGTACCTTAGTACGTACTCCAGC TACTGGTGTATCAAGCATTGGTCGTAACACTCAAGGTGTGACCATTATTCGTACCGCTGAAGATGAAAAAGTGGTAGGTC TACAGCGTATCGATGAAATTCAAGTTCCTGAAGTAGAGCTAGATGAAGAGGGCAACCCAATCATCGTTGAAGGCGCTGCA GAAACTGAAGGTCAAACTGAAGCTGCAAACACAGACGCTAGCAATACCGAAGGCGAAAGTACTGAAACGCCAAAAACTGA AGATTAA
Upstream 100 bases:
>100_bases GCCATAAAATAACTGTGTTAGAATGCCAAATCACGTTTTCAAGCATAGCTATTCTAGGAAATAGGAATAGCACGCTAAAT TTCAGGGGATCGAGCAGTTT
Downstream 100 bases:
>100_bases AATTAGTCACAATTCTGCGATTGATTAATCTAATAAAAAAGGATGCCATTGGCATCCTTTTTTATTTCTAATTAAAGACG AATTTAACGGTTACAGATAT
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 908; Mature: 907
Protein sequence:
>908_residues MTDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSARVVGDVIGKYHPH GDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLP TRIPTLLVNGSSGIAVGMATNIPPHNINEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRA VMRSRAEIEEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIKRGEVGEVVLNNLYA QTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPT PAEAKVKLVAEGWELGHVKGMLEKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELL EIIAALLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLGYAKYQVLSDYQAQRR GGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLAEGERITAILPVREYAE DKYIIMATSHGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKIDP ETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVSERNGA VVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRTAEDEKVVGLQRIDEIQVPEVELDEEGNPIIVEGAA ETEGQTEAANTDASNTEGESTETPKTED
Sequences:
>Translated_908_residues MTDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSARVVGDVIGKYHPH GDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLP TRIPTLLVNGSSGIAVGMATNIPPHNINEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRA VMRSRAEIEEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIKRGEVGEVVLNNLYA QTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPT PAEAKVKLVAEGWELGHVKGMLEKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELL EIIAALLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLGYAKYQVLSDYQAQRR GGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLAEGERITAILPVREYAE DKYIIMATSHGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKIDP ETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVSERNGA VVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRTAEDEKVVGLQRIDEIQVPEVELDEEGNPIIVEGAA ETEGQTEAANTDASNTEGESTETPKTED >Mature_907_residues TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSARVVGDVIGKYHPHG DTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPT RIPTLLVNGSSGIAVGMATNIPPHNINEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAV MRSRAEIEEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIKRGEVGEVVLNNLYAQ TQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTP AEAKVKLVAEGWELGHVKGMLEKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLE IIAALLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLGYAKYQVLSDYQAQRRG GKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLAEGERITAILPVREYAED KYIIMATSHGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKIDPE TGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVSERNGAV VGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRTAEDEKVVGLQRIDEIQVPEVELDEEGNPIIVEGAAE TEGQTEAANTDASNTEGESTETPKTED
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=175, Percent_Identity=32, Blast_Score=75, Evalue=3e-13, Organism=Homo sapiens, GI19913408, Length=179, Percent_Identity=32.4022346368715, Blast_Score=74, Evalue=9e-13, Organism=Escherichia coli, GI1788562, Length=891, Percent_Identity=70.4826038159372, Blast_Score=1269, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=663, Percent_Identity=38.3107088989442, Blast_Score=407, Evalue=1e-114, Organism=Caenorhabditis elegans, GI17535065, Length=174, Percent_Identity=33.9080459770115, Blast_Score=74, Evalue=3e-13, Organism=Caenorhabditis elegans, GI212645657, Length=173, Percent_Identity=33.5260115606936, Blast_Score=71, Evalue=2e-12, Organism=Caenorhabditis elegans, GI212645845, Length=193, Percent_Identity=29.0155440414508, Blast_Score=68, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324241, Length=346, Percent_Identity=26.878612716763, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI17136538, Length=349, Percent_Identity=25.7879656160458, Blast_Score=75, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 100110; Mature: 99978
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWN CCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCHHHHH RYTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCEEEEEEC NIPPHNINEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRA CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHCCCCHH VMRSRAEIEEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMR HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE IVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVV EEEEECCCCHHHHHHHHHHHHHEEEHHCCCEEEEEECCCCCEECHHHHHHHHHHHHHHHH TRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCHHHHHH MLEKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELL HHHHCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EIIAALLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVVVT HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCHHHHCCCCCEEEE LSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWL HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEE KVYQLPLASRTARGRPIVNLLPLAEGERITAILPVREYAEDKYIIMATSHGTVKKTALTA HEEECCCCCCCCCCCCCEEEEECCCCCEEEEEECHHHHCCCCEEEEEECCCCEEEEEEEE YSNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKIDP CCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCEEEECC ETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYP CCCCCEEEEEECCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCHHHCC AKSRGTKGVVSIKVSERNGAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGV CCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCEEECCCCCHHHHCCCCCCE TIIRTAEDEKVVGLQRIDEIQVPEVELDEEGNPIIVEGAAETEGQTEAANTDASNTEGES EEEEECCCCCEECHHHHCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC TETPKTED CCCCCCCC >Mature Secondary Structure TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWN CCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCHHHHH RYTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCEEEEEEC NIPPHNINEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRA CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHCCCCHH VMRSRAEIEEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMR HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE IVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVV EEEEECCCCHHHHHHHHHHHHHEEEHHCCCEEEEEECCCCCEECHHHHHHHHHHHHHHHH TRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCHHHHHH MLEKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELL HHHHCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EIIAALLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVVVT HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCHHHHCCCCCEEEE LSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWL HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEE KVYQLPLASRTARGRPIVNLLPLAEGERITAILPVREYAEDKYIIMATSHGTVKKTALTA HEEECCCCCCCCCCCCCEEEEECCCCCEEEEEECHHHHCCCCEEEEEECCCCEEEEEEEE YSNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKIDP CCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCEEEECC ETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYP CCCCCEEEEEECCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCHHHCC AKSRGTKGVVSIKVSERNGAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGV CCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCEEECCCCCHHHHCCCCCCE TIIRTAEDEKVVGLQRIDEIQVPEVELDEEGNPIIVEGAAETEGQTEAANTDASNTEGES EEEEECCCCCEECHHHHCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC TETPKTED CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7642123 [H]