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The map label for this gene is psd [H]

Identifier: 167623957

GI number: 167623957

Start: 2449299

End: 2450432

Strand: Reverse

Name: psd [H]

Synonym: Shal_2031

Alternate gene names: 167623957

Gene position: 2450432-2449299 (Counterclockwise)

Preceding gene: 167623959

Following gene: 167623955

Centisome position: 46.88

GC content: 38.54

Gene sequence:

>1134_bases
ATGACTAGCACTACAAGTATCGTACGGAACTTGAAACACATTATAGAATCAAAGCAAGAATACCGATTAGAACTAATAAA
GTGCATCGAAAAAGCAGAATGGATTCCTCCATACAGTGATACTGCTATCTCTAATCTAGATGGTTTCTACGAGTACCTAG
ATAAAATGCTGGTTACTACGCCTGCAGATTCCACATTTAGCGATCTGTTTCATGGCATATATTTTATTATCAGCCAAGGC
AGTAATAAGTTTCAGAAAGATCCAAATTTTGCTGAGTTTAAAAACTGGATGGTTTTGTATACTCAACAGTTTGGTGCCTT
CCTCAATAGTCCACAATCAAGTAATGATCTGCAATCTTTTATTGATGACAAAGGTTTTGTCATTGAAAACTTCATCGTGC
CGCCTGGAGGCTTTAACTCATTCAATGCTTTTTTCTGCAGAAATATTAAACCTGGCAAACGTCCTATCGGCGCTAAGACT
CTTGCCTACGAAAATTCGGCTAAAGGCCTTGATTCAAATCCAGATGAAGACCGAAATGAAATTCACAAAAATATGGCTGA
TGATAAGGTCATCACGGTGCCAGCAGACAGTGTATACAAAGGCACTTGGAAAATAAGTGAAACGGACACTATCAGCGTAT
CTAAAGGAAATACATATAGTATTGAAGAATTACTAAAACACACAAAATATGCCGACAGATTTAAGAACGGCATATTTACT
CATAGTTATCTAACGGTTTTGACTTATCACAGATACCATACACCTGTGCGAGGTACGATCTTAGAGCTAAAGCAACTTTC
AGGAGACGTTTTTGCTAATGTAACTAGAGATGAGCAAGGTCATTTAGGAGCTTCCGACGGTACTGATTATCAGTTTTCGC
AGGAGCGAGGCCTAATGGTTATTGACTCTCCAGTCGGCCTTGTCGCCTGCTTACCGATCGGTATGGATGTTATTTCATCA
TGTAATTTCAGTGTAGACGAAGGTGACTATCTGAATAAGGGTGATGAATTTGGTAATTTCCTTTTTGGCGGTTCCGATAT
GATAATGTTGTTTGAAAGAAACGACATTGATATTCAGGTTACACAAGAGGATATGCTGTACAAAATGGGGCAGGTATTTG
GTAAGGTCAAATAA

Upstream 100 bases:

>100_bases
ATATAAAAGTATGGAAGCTTGTTGAAAAGGTTTTATGAACTAAGCTTATTTTCAATAGGATTTAGCGTTAAATTTTAACA
AATATACAGAGGAATAAGAG

Downstream 100 bases:

>100_bases
AGTATTTGAACAACAGATTTAATCACCATAATGATGATTTGTTAAAGTGCCTTTGTAACACAAAAAAACCTGTTTATGCA
TCTGCATAATCAGGTTTTTT

Product: phosphatidylserine decarboxylase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTSTTSIVRNLKHIIESKQEYRLELIKCIEKAEWIPPYSDTAISNLDGFYEYLDKMLVTTPADSTFSDLFHGIYFIISQG
SNKFQKDPNFAEFKNWMVLYTQQFGAFLNSPQSSNDLQSFIDDKGFVIENFIVPPGGFNSFNAFFCRNIKPGKRPIGAKT
LAYENSAKGLDSNPDEDRNEIHKNMADDKVITVPADSVYKGTWKISETDTISVSKGNTYSIEELLKHTKYADRFKNGIFT
HSYLTVLTYHRYHTPVRGTILELKQLSGDVFANVTRDEQGHLGASDGTDYQFSQERGLMVIDSPVGLVACLPIGMDVISS
CNFSVDEGDYLNKGDEFGNFLFGGSDMIMLFERNDIDIQVTQEDMLYKMGQVFGKVK

Sequences:

>Translated_377_residues
MTSTTSIVRNLKHIIESKQEYRLELIKCIEKAEWIPPYSDTAISNLDGFYEYLDKMLVTTPADSTFSDLFHGIYFIISQG
SNKFQKDPNFAEFKNWMVLYTQQFGAFLNSPQSSNDLQSFIDDKGFVIENFIVPPGGFNSFNAFFCRNIKPGKRPIGAKT
LAYENSAKGLDSNPDEDRNEIHKNMADDKVITVPADSVYKGTWKISETDTISVSKGNTYSIEELLKHTKYADRFKNGIFT
HSYLTVLTYHRYHTPVRGTILELKQLSGDVFANVTRDEQGHLGASDGTDYQFSQERGLMVIDSPVGLVACLPIGMDVISS
CNFSVDEGDYLNKGDEFGNFLFGGSDMIMLFERNDIDIQVTQEDMLYKMGQVFGKVK
>Mature_376_residues
TSTTSIVRNLKHIIESKQEYRLELIKCIEKAEWIPPYSDTAISNLDGFYEYLDKMLVTTPADSTFSDLFHGIYFIISQGS
NKFQKDPNFAEFKNWMVLYTQQFGAFLNSPQSSNDLQSFIDDKGFVIENFIVPPGGFNSFNAFFCRNIKPGKRPIGAKTL
AYENSAKGLDSNPDEDRNEIHKNMADDKVITVPADSVYKGTWKISETDTISVSKGNTYSIEELLKHTKYADRFKNGIFTH
SYLTVLTYHRYHTPVRGTILELKQLSGDVFANVTRDEQGHLGASDGTDYQFSQERGLMVIDSPVGLVACLPIGMDVISSC
NFSVDEGDYLNKGDEFGNFLFGGSDMIMLFERNDIDIQVTQEDMLYKMGQVFGKVK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790604, Length=260, Percent_Identity=27.6923076923077, Blast_Score=80, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6321609, Length=275, Percent_Identity=25.0909090909091, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 42621; Mature: 42490

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTTSIVRNLKHIIESKQEYRLELIKCIEKAEWIPPYSDTAISNLDGFYEYLDKMLVTT
CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PADSTFSDLFHGIYFIISQGSNKFQKDPNFAEFKNWMVLYTQQFGAFLNSPQSSNDLQSF
CCCCHHHHHHHHHEEEEECCCCCCCCCCCHHHHHCCCEEEHHHHHHHHCCCCCCHHHHHH
IDDKGFVIENFIVPPGGFNSFNAFFCRNIKPGKRPIGAKTLAYENSAKGLDSNPDEDRNE
HCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHH
IHKNMADDKVITVPADSVYKGTWKISETDTISVSKGNTYSIEELLKHTKYADRFKNGIFT
HHHCCCCCCEEEECCCCEECCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCH
HSYLTVLTYHRYHTPVRGTILELKQLSGDVFANVTRDEQGHLGASDGTDYQFSQERGLMV
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECCCCCEEE
IDSPVGLVACLPIGMDVISSCNFSVDEGDYLNKGDEFGNFLFGGSDMIMLFERNDIDIQV
EECCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCEEECCCCEEEEEECCCCEEEE
TQEDMLYKMGQVFGKVK
CHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSTTSIVRNLKHIIESKQEYRLELIKCIEKAEWIPPYSDTAISNLDGFYEYLDKMLVTT
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PADSTFSDLFHGIYFIISQGSNKFQKDPNFAEFKNWMVLYTQQFGAFLNSPQSSNDLQSF
CCCCHHHHHHHHHEEEEECCCCCCCCCCCHHHHHCCCEEEHHHHHHHHCCCCCCHHHHHH
IDDKGFVIENFIVPPGGFNSFNAFFCRNIKPGKRPIGAKTLAYENSAKGLDSNPDEDRNE
HCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHH
IHKNMADDKVITVPADSVYKGTWKISETDTISVSKGNTYSIEELLKHTKYADRFKNGIFT
HHHCCCCCCEEEECCCCEECCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCH
HSYLTVLTYHRYHTPVRGTILELKQLSGDVFANVTRDEQGHLGASDGTDYQFSQERGLMV
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECCCCCEEE
IDSPVGLVACLPIGMDVISSCNFSVDEGDYLNKGDEFGNFLFGGSDMIMLFERNDIDIQV
EECCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCEEECCCCEEEEEECCCCEEEE
TQEDMLYKMGQVFGKVK
CHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11889109 [H]