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The map label for this gene is 167623939

Identifier: 167623939

GI number: 167623939

Start: 2429069

End: 2429593

Strand: Reverse

Name: 167623939

Synonym: Shal_2013

Alternate gene names: NA

Gene position: 2429593-2429069 (Counterclockwise)

Preceding gene: 167623942

Following gene: 167623933

Centisome position: 46.48

GC content: 43.43

Gene sequence:

>525_bases
ATGGTTAACATCCATGGCAAGATTGCGGAGCAATTAAACCGATCAGGGATTTTTCTAACCAAGACCGAAATAGAGTGTCT
TGAGATAACAGACTTTGGTTTGAATGACTTCTACAATGCGGGTCTAATCATTCATACCTACATTAATACCGAACGCTGCT
GCGCCAAGGAGCTCATCCTGCTCGCTAATCAGGTTTGTCCTGAGCACGTTCACCCCTCAAGTGCTGCTCTAGAAGGTAAA
GAGGAAACCTTTCGCTGTCGCTTTGGCAGAGTTAGTGTGTTTATTGAAGGCAATAAAACCACACAACCTTGTGTTGAGCT
TCCTGCTGATATTACCAATTACACGGTTTTCCACGAAGTGGTACTAAATAAAGGCGAGCAGTTGACCTTAAAACCCAATT
CAAAGCATTGGTTTAAGGCACACGGCGAAGGGGCTATCGTCTCTGAATTTTCAACGACGTCAAACGATGATACCGACGTT
TTTACCAATCAAAAGATTAATAGAGCCAGCCGACTCAGCTTATAA

Upstream 100 bases:

>100_bases
TGTGACCCAGTCTTCATAGTTATAAACGCTTCATTTAAATTAGATTGCCACCATATTATCTTAGCGTCGAATTGGCTTCA
TTGAGTAAAGAGAGTTAGCA

Downstream 100 bases:

>100_bases
ACGAGCGAAGTAACTCTACGCTCGTTTAACTAAGGATTATGGTTAAATGCTACTTACGCATCTCAAGTAACTCATTAACG
TTTTGCTTGTTAACCACAGT

Product: YdaE

Products: NA

Alternate protein names: D-lyxose isomerase; L-ribose isomerase [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MVNIHGKIAEQLNRSGIFLTKTEIECLEITDFGLNDFYNAGLIIHTYINTERCCAKELILLANQVCPEHVHPSSAALEGK
EETFRCRFGRVSVFIEGNKTTQPCVELPADITNYTVFHEVVLNKGEQLTLKPNSKHWFKAHGEGAIVSEFSTTSNDDTDV
FTNQKINRASRLSL

Sequences:

>Translated_174_residues
MVNIHGKIAEQLNRSGIFLTKTEIECLEITDFGLNDFYNAGLIIHTYINTERCCAKELILLANQVCPEHVHPSSAALEGK
EETFRCRFGRVSVFIEGNKTTQPCVELPADITNYTVFHEVVLNKGEQLTLKPNSKHWFKAHGEGAIVSEFSTTSNDDTDV
FTNQKINRASRLSL
>Mature_174_residues
MVNIHGKIAEQLNRSGIFLTKTEIECLEITDFGLNDFYNAGLIIHTYINTERCCAKELILLANQVCPEHVHPSSAALEGK
EETFRCRFGRVSVFIEGNKTTQPCVELPADITNYTVFHEVVLNKGEQLTLKPNSKHWFKAHGEGAIVSEFSTTSNDDTDV
FTNQKINRASRLSL

Specific function: Unknown

COG id: COG3822

COG function: function code R; ABC-type sugar transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the D-lyxose ketol-isomerase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: =5.3.1.15 [H]

Molecular weight: Translated: 19544; Mature: 19544

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNIHGKIAEQLNRSGIFLTKTEIECLEITDFGLNDFYNAGLIIHTYINTERCCAKELIL
CCCCCHHHHHHHCCCCEEEEECCCEEEEEEECCCCHHCCCCEEEEEEECCHHHHHHHHHH
LANQVCPEHVHPSSAALEGKEETFRCRFGRVSVFIEGNKTTQPCVELPADITNYTVFHEV
HHHHCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCCHHHHCCCCCHHHHHHHHH
VLNKGEQLTLKPNSKHWFKAHGEGAIVSEFSTTSNDDTDVFTNQKINRASRLSL
HHCCCCEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCEECCCCCCCHHHCCC
>Mature Secondary Structure
MVNIHGKIAEQLNRSGIFLTKTEIECLEITDFGLNDFYNAGLIIHTYINTERCCAKELIL
CCCCCHHHHHHHCCCCEEEEECCCEEEEEEECCCCHHCCCCEEEEEEECCHHHHHHHHHH
LANQVCPEHVHPSSAALEGKEETFRCRFGRVSVFIEGNKTTQPCVELPADITNYTVFHEV
HHHHCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCCHHHHCCCCCHHHHHHHHH
VLNKGEQLTLKPNSKHWFKAHGEGAIVSEFSTTSNDDTDVFTNQKINRASRLSL
HHCCCCEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCEECCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA