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The map label for this gene is ydaM [H]

Identifier: 167623669

GI number: 167623669

Start: 2084447

End: 2085472

Strand: Reverse

Name: ydaM [H]

Synonym: Shal_1738

Alternate gene names: 167623669

Gene position: 2085472-2084447 (Counterclockwise)

Preceding gene: 167623670

Following gene: 167623665

Centisome position: 39.9

GC content: 42.5

Gene sequence:

>1026_bases
ATGGCTAACCCATTGCTAAAGGAATCTGCATCGAAATTAAAGAAAGCGATTCCTTTAATGTTGAAACATCAGATCCCGAC
GACACCGACAAACTATGCTCTCTGGTATGCCTATGTCGGTGAGAAAAGCCCAAAGCTTAACCTATATTTAGATCAAGTCG
TCAGTCAGTACAGCACCTGCCCGCCAAGTCATAGCGAACGCCTTTATCGAGAGTTTTTATCAGATCCTATTGAGCTTGAT
ATTGTCGATATGCGCCTCAATCTCGACGCAATGGTGACAGAGCTTTCTCAATCGCTTAAAGACACTAACCTTGATGCTAA
TCAGTTCCACAGCAAAATAAAAAACAATTACAACAAGCTCAATAAAATCGAGAGTGACGGTTTTACCATTGAAGAAGTGC
TAAGCGTTATCAAAAACCTTGTTCAAGACGCAAATGAAATACGCGTTAGTGCCCAGCAATTTTCTGAGCAGCTCGCTAGG
GCGCAATCAGAAATTGACACGCTTAAGCTACAATTAAAGCAGTCTGAACATGAGATGCACTTTGATGCCTTAACAAATTC
TCTAAACCGCCGAGCATTTAATAAAGATCTCAAAGGAATTATTGAGCTGCACCCACAGGGTCTTTGTTTAATCATTGCCG
ATATCGATCACTTTAAAGTGTTTAACGACACATACGGCCACCAGCTTGGCGATCAAGTATTAAAAGCCGTGACTAAACGC
TTAACTGAGGCTTGCCAAGATGGCACTAAACTGTATCGCTTTGGCGGTGAAGAGTTTGCCCTCATTGTGCCGAAGAGCCA
ATTAGGCCGAGCCCGTCAATTGGCTGAATCTATGCGCCGTAGTCTAGAGAAGTTGATTTTGAAAGATAGGCGAAAAGGAG
ACACGATTAACAACATTAGTGCCTCTTTTGGCGTTGCCGAATATCAATTAAACGATACTGATAACCAGTTAATAGAGCGG
GCTGACAAACAGCTTTATGAAGCAAAGCGCTTAGGAAGAAACCGCGTAATGCCTATCTCAGTCTAA

Upstream 100 bases:

>100_bases
AAAAACATAATAGAATGGACAAATAAAATGCACAATGATGTTGTTTTTCATTTGCATACAAATAACAGAACCAATAATTA
ATTGGCGATAAGGCACCACT

Downstream 100 bases:

>100_bases
GCTTTGTTAGGTTAAATGGCATTCAATCAGAGCGGCTTAGCGCTATGGGCACCATTGCCTTAGCGCCAGCATCGCTAGCT
CTGATCACCGTTAATAGTTA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MANPLLKESASKLKKAIPLMLKHQIPTTPTNYALWYAYVGEKSPKLNLYLDQVVSQYSTCPPSHSERLYREFLSDPIELD
IVDMRLNLDAMVTELSQSLKDTNLDANQFHSKIKNNYNKLNKIESDGFTIEEVLSVIKNLVQDANEIRVSAQQFSEQLAR
AQSEIDTLKLQLKQSEHEMHFDALTNSLNRRAFNKDLKGIIELHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKR
LTEACQDGTKLYRFGGEEFALIVPKSQLGRARQLAESMRRSLEKLILKDRRKGDTINNISASFGVAEYQLNDTDNQLIER
ADKQLYEAKRLGRNRVMPISV

Sequences:

>Translated_341_residues
MANPLLKESASKLKKAIPLMLKHQIPTTPTNYALWYAYVGEKSPKLNLYLDQVVSQYSTCPPSHSERLYREFLSDPIELD
IVDMRLNLDAMVTELSQSLKDTNLDANQFHSKIKNNYNKLNKIESDGFTIEEVLSVIKNLVQDANEIRVSAQQFSEQLAR
AQSEIDTLKLQLKQSEHEMHFDALTNSLNRRAFNKDLKGIIELHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKR
LTEACQDGTKLYRFGGEEFALIVPKSQLGRARQLAESMRRSLEKLILKDRRKGDTINNISASFGVAEYQLNDTDNQLIER
ADKQLYEAKRLGRNRVMPISV
>Mature_340_residues
ANPLLKESASKLKKAIPLMLKHQIPTTPTNYALWYAYVGEKSPKLNLYLDQVVSQYSTCPPSHSERLYREFLSDPIELDI
VDMRLNLDAMVTELSQSLKDTNLDANQFHSKIKNNYNKLNKIESDGFTIEEVLSVIKNLVQDANEIRVSAQQFSEQLARA
QSEIDTLKLQLKQSEHEMHFDALTNSLNRRAFNKDLKGIIELHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKRL
TEACQDGTKLYRFGGEEFALIVPKSQLGRARQLAESMRRSLEKLILKDRRKGDTINNISASFGVAEYQLNDTDNQLIERA
DKQLYEAKRLGRNRVMPISV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=38.0952380952381, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=36.3095238095238, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693134, Length=189, Percent_Identity=34.9206349206349, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=38.4146341463415, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787816, Length=213, Percent_Identity=31.924882629108, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787802, Length=195, Percent_Identity=32.3076923076923, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=37.1794871794872, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1786584, Length=158, Percent_Identity=32.2784810126582, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=31.7919075144509, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=28.9017341040462, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=30.952380952381, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=29.8701298701299, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 38953; Mature: 38822

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPLLKESASKLKKAIPLMLKHQIPTTPTNYALWYAYVGEKSPKLNLYLDQVVSQYSTC
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC
PPSHSERLYREFLSDPIELDIVDMRLNLDAMVTELSQSLKDTNLDANQFHSKIKNNYNKL
CCCHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NKIESDGFTIEEVLSVIKNLVQDANEIRVSAQQFSEQLARAQSEIDTLKLQLKQSEHEMH
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDALTNSLNRRAFNKDLKGIIELHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKR
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LTEACQDGTKLYRFGGEEFALIVPKSQLGRARQLAESMRRSLEKLILKDRRKGDTINNIS
HHHHHHCCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ASFGVAEYQLNDTDNQLIERADKQLYEAKRLGRNRVMPISV
HHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ANPLLKESASKLKKAIPLMLKHQIPTTPTNYALWYAYVGEKSPKLNLYLDQVVSQYSTC
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC
PPSHSERLYREFLSDPIELDIVDMRLNLDAMVTELSQSLKDTNLDANQFHSKIKNNYNKL
CCCHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NKIESDGFTIEEVLSVIKNLVQDANEIRVSAQQFSEQLARAQSEIDTLKLQLKQSEHEMH
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDALTNSLNRRAFNKDLKGIIELHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKR
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LTEACQDGTKLYRFGGEEFALIVPKSQLGRARQLAESMRRSLEKLILKDRRKGDTINNIS
HHHHHHCCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ASFGVAEYQLNDTDNQLIERADKQLYEAKRLGRNRVMPISV
HHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]