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The map label for this gene is agmR [H]

Identifier: 167623632

GI number: 167623632

Start: 2042574

End: 2043233

Strand: Reverse

Name: agmR [H]

Synonym: Shal_1701

Alternate gene names: 167623632

Gene position: 2043233-2042574 (Counterclockwise)

Preceding gene: 167623633

Following gene: 167623630

Centisome position: 39.09

GC content: 42.12

Gene sequence:

>660_bases
ATGAAGCCTGAAAATTTAAATATTATTATTGCAGATGACCATCCGTTATTTAGAAACGCACTGAGACAAGCTTTGTCGTC
TGAGTTTAAAAATACACAATGGTTTGAAGCAGATAGTGCCGACGCACTACAAGCCCTACTCGAGAGCAGTGACATTGAAT
ATGATGTGGTGTTATTAGATCTGCAGATGCCTGGTTCCCATGGCTACTCAACGCTGATCCACCTAAGAACGCATTTTCAG
GAGTTACCCGTTGTGGTGATCTCCGCTCATGAAGATAACCTCACAATAAGCCGCGCTATTCATTATGGTAGCTCTGGGTT
TATTCCAAAATCTTCTTCTATGGAAACCTTAGCCGAAGCATTAGAAGCGGTACTATTTGGTGATATTTGGTTGCCTCAAG
GCGTTGAGCTTCAAGAGATCAATGAAGATGAAACGAATCAAATGGCCAGTAAGTTAGCCGATCTCACTCCCCAGCAATAT
AAAGTGCTGCAGATGTTTGCAGAAGGCTTACTCAATAAACAAATTGCCTATGACCTCGGCGTGTCAGAAGCCACCATTAA
GGCACATGCTACAGCGATATTTAGAAAGCTTGGTGTAAGAAATCGTACTCAAGCTGTCATTTCCTTACAGCAACTCGAGA
TGGATAAAGTCGACATTTAA

Upstream 100 bases:

>100_bases
CTAAATAATCCCTTTTCCAAGCTAAAGCCATAGAATCCCCGGTCATTTATCTGTTACATTGAATCATCTTCACGCGCAAC
CAAAACAACCTTATAAAGCC

Downstream 100 bases:

>100_bases
CGAGTCGATATCCTAGTATGTATCGCGACTAATAAAAATTCCGCTAACGAGTAATCGAAGCGGATTTTTATTATTCTCTG
CCTTGCTAATTTCGAAGCGC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQALLESSDIEYDVVLLDLQMPGSHGYSTLIHLRTHFQ
ELPVVVISAHEDNLTISRAIHYGSSGFIPKSSSMETLAEALEAVLFGDIWLPQGVELQEINEDETNQMASKLADLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVISLQQLEMDKVDI

Sequences:

>Translated_219_residues
MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQALLESSDIEYDVVLLDLQMPGSHGYSTLIHLRTHFQ
ELPVVVISAHEDNLTISRAIHYGSSGFIPKSSSMETLAEALEAVLFGDIWLPQGVELQEINEDETNQMASKLADLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVISLQQLEMDKVDI
>Mature_219_residues
MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQALLESSDIEYDVVLLDLQMPGSHGYSTLIHLRTHFQ
ELPVVVISAHEDNLTISRAIHYGSSGFIPKSSSMETLAEALEAVLFGDIWLPQGVELQEINEDETNQMASKLADLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVISLQQLEMDKVDI

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=201, Percent_Identity=33.8308457711443, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1786747, Length=209, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789937, Length=204, Percent_Identity=27.9411764705882, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788546, Length=205, Percent_Identity=29.7560975609756, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=25.8883248730964, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1787473, Length=212, Percent_Identity=28.7735849056604, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788222, Length=197, Percent_Identity=21.8274111675127, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790102, Length=197, Percent_Identity=26.9035532994924, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24479; Mature: 24479

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQALLESSDIEYDVVLLD
CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEE
LQMPGSHGYSTLIHLRTHFQELPVVVISAHEDNLTISRAIHYGSSGFIPKSSSMETLAEA
EECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEEEEHEEECCCCCCCCCCCCHHHHHHH
LEAVLFGDIWLPQGVELQEINEDETNQMASKLADLTPQQYKVLQMFAEGLLNKQIAYDLG
HHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
VSEATIKAHATAIFRKLGVRNRTQAVISLQQLEMDKVDI
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQALLESSDIEYDVVLLD
CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEE
LQMPGSHGYSTLIHLRTHFQELPVVVISAHEDNLTISRAIHYGSSGFIPKSSSMETLAEA
EECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEEEEHEEECCCCCCCCCCCCHHHHHHH
LEAVLFGDIWLPQGVELQEINEDETNQMASKLADLTPQQYKVLQMFAEGLLNKQIAYDLG
HHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
VSEATIKAHATAIFRKLGVRNRTQAVISLQQLEMDKVDI
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]