Click here to switch to the map view.

The map label for this gene is 167623458

Identifier: 167623458

GI number: 167623458

Start: 1843146

End: 1843568

Strand: Reverse

Name: 167623458

Synonym: Shal_1527

Alternate gene names: NA

Gene position: 1843568-1843146 (Counterclockwise)

Preceding gene: 167623459

Following gene: 167623452

Centisome position: 35.27

GC content: 43.74

Gene sequence:

>423_bases
ATGTTTAGAAAAAAAAGAAGCGGCGGGTTAACTTTTATTGCTCAAGGTACCCAGTTTACGGGTGAAACGGAGTTTGCAGC
CGAAGCCCTTATTGCTGGCGAGCTGTTCGGAAAAGTGCGTTCCAGTGGCGATATTACCATTGAACAAGGTGGGCTAGTCG
ATGGCAAACTTCACTGCACTGAACTGCGAGTATCCGGCACCTTTCGAGGCAAGTTAACCTGTGAAAAACTAAATATCACC
AGCACTGGTCTGGTTGATGGTGAAGTTAACTGTCAGTCGATGGAAATTTTTGAAGGGGGTCAATTTATCGGTATGCGCGT
AAGAGACGATATTGCCTTCCTACCTTCCAATACTGACCCTAAAAAAGTCATCAACAAACCTGCAAAAGAACAACTAATTG
AAGATGCTGAACTAAGCATTTAA

Upstream 100 bases:

>100_bases
ATAGCCAAAAATATGACATATAAGCGCCAAATTTAAGTGGTTTTGTTTCCGATAGTTTCAAGGTAACATCTAAATAACTT
AGACTGACAGCGACATAATT

Downstream 100 bases:

>100_bases
TTAGTGCCAGCGATACCTTAGCAACTCCCCTGTATGTGATGACTAAAATTGACCATAGATAGCTTAACTTAGCTAAGCTT
GGAGCTATAGTTACTCTAAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MFRKKRSGGLTFIAQGTQFTGETEFAAEALIAGELFGKVRSSGDITIEQGGLVDGKLHCTELRVSGTFRGKLTCEKLNIT
STGLVDGEVNCQSMEIFEGGQFIGMRVRDDIAFLPSNTDPKKVINKPAKEQLIEDAELSI

Sequences:

>Translated_140_residues
MFRKKRSGGLTFIAQGTQFTGETEFAAEALIAGELFGKVRSSGDITIEQGGLVDGKLHCTELRVSGTFRGKLTCEKLNIT
STGLVDGEVNCQSMEIFEGGQFIGMRVRDDIAFLPSNTDPKKVINKPAKEQLIEDAELSI
>Mature_140_residues
MFRKKRSGGLTFIAQGTQFTGETEFAAEALIAGELFGKVRSSGDITIEQGGLVDGKLHCTELRVSGTFRGKLTCEKLNIT
STGLVDGEVNCQSMEIFEGGQFIGMRVRDDIAFLPSNTDPKKVINKPAKEQLIEDAELSI

Specific function: Unknown

COG id: COG1664

COG function: function code M; Integral membrane protein CcmA involved in cell shape determination

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15203; Mature: 15203

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRKKRSGGLTFIAQGTQFTGETEFAAEALIAGELFGKVRSSGDITIEQGGLVDGKLHCT
CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEECCEEEEE
ELRVSGTFRGKLTCEKLNITSTGLVDGEVNCQSMEIFEGGQFIGMRVRDDIAFLPSNTDP
EEEEECEECCEEEEEEECCCCCCEECCCCCCEEEEEECCCEEEEEEECCCEEECCCCCCH
KKVINKPAKEQLIEDAELSI
HHHHCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MFRKKRSGGLTFIAQGTQFTGETEFAAEALIAGELFGKVRSSGDITIEQGGLVDGKLHCT
CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEECCEEEEE
ELRVSGTFRGKLTCEKLNITSTGLVDGEVNCQSMEIFEGGQFIGMRVRDDIAFLPSNTDP
EEEEECEECCEEEEEEECCCCCCEECCCCCCEEEEEECCCEEEEEEECCCEEECCCCCCH
KKVINKPAKEQLIEDAELSI
HHHHCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA