| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623403
Identifier: 167623403
GI number: 167623403
Start: 1770400
End: 1771341
Strand: Direct
Name: 167623403
Synonym: Shal_1472
Alternate gene names: NA
Gene position: 1770400-1771341 (Clockwise)
Preceding gene: 167623402
Following gene: 167623404
Centisome position: 33.87
GC content: 44.48
Gene sequence:
>942_bases ATGTCAAAATCAGTTGATGATGCGGTATGTGATTATTTTTCGCTGTTGCTTAATGAGCCACAACCAAAACCCGTAATAGA CAACAAAATAACACAAAGCCATTATGGCCAAAGCAGATTGCCACAAACTATAGAGACAGATGAGCGCTTAAGTCGGCAAG CATTAGAGCAATTGTTCGCACGCTCACCTAAAGAAAACGGCAAGCTAGTCGAAGAGGTGTGCGCTAAAGAGGCGGTTAGT GTCGAAGCTATCTCTGATATCGATTGTATTGCCAGTATTGATTGTATTACTCGTATAAAAAGTACTGGCAACAACACTAA CAATATACAAGAGACCAAGATCGAGCCTCTAGGTGTGCTAGAAGCGGATCGACAAATTGAGCCTGCTGGGCTCAGTGATA GCCAAAATGCGCTTGATATAGCGCCTCAAGTTAACGTGAAATCGGCCATTGAGCCTTTAGTGTCAACCCAAACCTTATTA GAACAGCTTGATGACGAGTTTCAGGTGCTGTTCTTTAAGGTCGCGGGTTTAACGCTCGCAGTCCCTTTAGTGAGCCTCGG CGGGATAGTCGGCTTAGAAAAGATAACTCGATTAATGGGACGCCCCCAGTGGTATATGGGCGTACAGCAGTATCGGGAGA CACAGCTTAATGTTGTCGATACCTGTGCCTGGGTGATGCCTGAAAAATATGACGAGAAGCTAGTTAAAAAGGTTAACTAT CAATATGTAGTCGTACTTGAAGATAGTCATTGGGGGCTAGGGTGTGAGTCATTAATTGATGCGATAACGATTAAAAAATC TGAAGTCAATTGGCGCAGCCAAGCTGGAAAACGCCCATGGCTTGCAGGTGTGGTAAAAGAGCAGATGTGTGGCATTTTAA ATGTCGAAGCCTTGGTGCAAATGTTGGGCTCAGGTTTAGGTTGCCAAGATCCTCTCACATAG
Upstream 100 bases:
>100_bases AGTTTGAGTCATTTACCCGCTTCCCATTACGCCCCTAGTAGCCGTGGCGTGAAGGCCTACAATAGACTACTCGATTATTT ACTCGCGAAGGATTTATCTC
Downstream 100 bases:
>100_bases TGCACGACATAGTGCACTAATAGAGGCAGGGCTTAAATAACTCAAGTAGAGGCAGAGCTTAAATAGCTCAAGCTGAAATA ATATCAATAACGGTGTATTG
Product: CheW protein
Products: NA
Alternate protein names: CheW Domain-Containing Protein; CheW-Like Protein; CheW Domain Protein; CheW-Like Domain-Containing Protein; Chemotaxis Coupling Protein; Chemotaxis-Like Protein; Flagellar Hook-Basal Body Complex Protein FliE
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MSKSVDDAVCDYFSLLLNEPQPKPVIDNKITQSHYGQSRLPQTIETDERLSRQALEQLFARSPKENGKLVEEVCAKEAVS VEAISDIDCIASIDCITRIKSTGNNTNNIQETKIEPLGVLEADRQIEPAGLSDSQNALDIAPQVNVKSAIEPLVSTQTLL EQLDDEFQVLFFKVAGLTLAVPLVSLGGIVGLEKITRLMGRPQWYMGVQQYRETQLNVVDTCAWVMPEKYDEKLVKKVNY QYVVVLEDSHWGLGCESLIDAITIKKSEVNWRSQAGKRPWLAGVVKEQMCGILNVEALVQMLGSGLGCQDPLT
Sequences:
>Translated_313_residues MSKSVDDAVCDYFSLLLNEPQPKPVIDNKITQSHYGQSRLPQTIETDERLSRQALEQLFARSPKENGKLVEEVCAKEAVS VEAISDIDCIASIDCITRIKSTGNNTNNIQETKIEPLGVLEADRQIEPAGLSDSQNALDIAPQVNVKSAIEPLVSTQTLL EQLDDEFQVLFFKVAGLTLAVPLVSLGGIVGLEKITRLMGRPQWYMGVQQYRETQLNVVDTCAWVMPEKYDEKLVKKVNY QYVVVLEDSHWGLGCESLIDAITIKKSEVNWRSQAGKRPWLAGVVKEQMCGILNVEALVQMLGSGLGCQDPLT >Mature_312_residues SKSVDDAVCDYFSLLLNEPQPKPVIDNKITQSHYGQSRLPQTIETDERLSRQALEQLFARSPKENGKLVEEVCAKEAVSV EAISDIDCIASIDCITRIKSTGNNTNNIQETKIEPLGVLEADRQIEPAGLSDSQNALDIAPQVNVKSAIEPLVSTQTLLE QLDDEFQVLFFKVAGLTLAVPLVSLGGIVGLEKITRLMGRPQWYMGVQQYRETQLNVVDTCAWVMPEKYDEKLVKKVNYQ YVVVLEDSHWGLGCESLIDAITIKKSEVNWRSQAGKRPWLAGVVKEQMCGILNVEALVQMLGSGLGCQDPLT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34693; Mature: 34562
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: PS50851 CHEW
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSVDDAVCDYFSLLLNEPQPKPVIDNKITQSHYGQSRLPQTIETDERLSRQALEQLFA CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHH RSPKENGKLVEEVCAKEAVSVEAISDIDCIASIDCITRIKSTGNNTNNIQETKIEPLGVL CCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC EADRQIEPAGLSDSQNALDIAPQVNVKSAIEPLVSTQTLLEQLDDEFQVLFFKVAGLTLA CCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH VPLVSLGGIVGLEKITRLMGRPQWYMGVQQYRETQLNVVDTCAWVMPEKYDEKLVKKVNY HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC QYVVVLEDSHWGLGCESLIDAITIKKSEVNWRSQAGKRPWLAGVVKEQMCGILNVEALVQ EEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHH MLGSGLGCQDPLT HHCCCCCCCCCCC >Mature Secondary Structure SKSVDDAVCDYFSLLLNEPQPKPVIDNKITQSHYGQSRLPQTIETDERLSRQALEQLFA CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHH RSPKENGKLVEEVCAKEAVSVEAISDIDCIASIDCITRIKSTGNNTNNIQETKIEPLGVL CCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC EADRQIEPAGLSDSQNALDIAPQVNVKSAIEPLVSTQTLLEQLDDEFQVLFFKVAGLTLA CCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH VPLVSLGGIVGLEKITRLMGRPQWYMGVQQYRETQLNVVDTCAWVMPEKYDEKLVKKVNY HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC QYVVVLEDSHWGLGCESLIDAITIKKSEVNWRSQAGKRPWLAGVVKEQMCGILNVEALVQ EEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHH MLGSGLGCQDPLT HHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA