| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is flgK [H]
Identifier: 167623367
GI number: 167623367
Start: 1732317
End: 1734236
Strand: Direct
Name: flgK [H]
Synonym: Shal_1436
Alternate gene names: 167623367
Gene position: 1732317-1734236 (Clockwise)
Preceding gene: 167623366
Following gene: 167623368
Centisome position: 33.14
GC content: 47.66
Gene sequence:
>1920_bases ATGTCTTTAGACTTAATGAATATTGCTCGCACCGGCGTGTTGGCCTCACAGTCACAACTGGCGATTACCAGTAATAACAT CGCTAATGCTAATACCGCAGGTTACAACCGTCAGGTGGTATCTCAGTCGGCGCTAGATTCACAGCGCATGGGCAATGAAT TTTATGGCGCAGGTACTTATGTGTCTGATGTTAAACGCGTCTATAACGATTATGCTACACGGGAACTGCGCATAGGCTCT ACCGCTGTCAGTGAATCACAAACCACCTTTAGCAAGATGAGTCAGCTTGACCAGCTATTCTCGCAAATGGGAAAAGCTGT GCCGCAGGGGCTAAATGATTTCTTCGCCAGCATGAATGCCTTAGCAGACATTCCTAATGATATGGGGCTGCGTGGTTCGT TTTTAACCAGTGCGAATCAGTTAGCCAATAGCGTTAATCAGATGCAGAGTCATCTTGATAGCCAAATGACCCAAACCAAT GATCAGATCTCCGCTGTTACCGACCGAATCAATGAGATCAGTAATGAGCTTGGTAGTATCAACCGTGAGTTGATGAAGTC TCAGGGTCAAGATATGCAGTTGCTAGATAAGCAAGATGCCTTGATTTTAGAGCTCAGTGAGTACGCATCCGTTAACGTAA TACCGCTAGAATCTGGTGCCAAGAGCATTATGCTCGGAGGCTCGATGATGCTGGTATCGGGCGAAATGTCGATGCAAGTG GGCACAGCACCGGGCGACCCCTACCCGAATGAGTTACAGATCACTGCGCAATCGGGCAGCAAGAGCATGATTGTCGATGC GAGTAAAATGGGCGGCCAGTTAGGTGCGTTAGTTAATTATCGCGATGAAACCTTGATCCCGTCACAGATGGAGCTTGGGC AATTTGCTTTAGGCGTTAGTGATGCGTTTAACCAAGCGCAAGCGCAAGGCTTCGACTTAAATGGCCAAGTGGGCGCTAAT ATCTTTACCGACATCAACGACCCATCGATGCAATTAGGTCGTGTAGGTGCATTATCAAGCAATACCGGTACAGCCAATCT AAGCGTTAATATTGATGATGTAGGCAGTTTAACTGGCAGCAGTTATGAACTTAAGTTTACTGCGCCATCAACCTATGAGC TGAAAGATGCCGTCAGCGGCAATATTACGCCGCTAACACTTAACGGCACAAAACTCGAAGGCGCTAACGGCTTTAGCATC AATATCGATGCCGGTGCACTGGCCTCTGGGGATACCTTTGAAATCCGTCCAACCTCAAGTGCAGCGGTTTCATTATCGGT TGAAATGACCGATGCCAAAGGTATTGCTGCAGCAGGGGCAAAGATCACCGCCGATGCGGCAAATACTGGCAATAGCCAAG TTAGTTTAGTCAGCATTGATAAAAGAACTGAAACGGGCTTTCCTGTAACAGGCGCCGAACTTACCTTTGAAATTGATCCT TCTACAACGCCGCCAAGCTATGAAGTGTTTGACGTTGATGGCGCATCCCTTGGTGCGGACACTTATACACCGCCAACAAT CAGCTCGCATGGTTTTACCTTCGAGATTGATTCAACTGCGACCGCCGCAGAGAAGTTCACCTTCGATTTGTCATTTGCCG AGGGCGATAACACAAACATGGTGAGTATGGCCAAGCTCAGCGAAGCCAAACTGATGAATGGCGGTAAAACCACGCTGACA GATGTTTTTGAAAATACAACAATCGATGTGGGCAGTAAGACTAAGTCGGCTGAAATATCGATGGGATCGGCTGAGGCCAT TTATAAGCAGGCCTATACCCGCGTTCAAAGTGTTTCTGGGGTCAATCTTGATGAAGAGGCGGCAAATCTGATGCGTTTTC AGCAGTCATATCAGGCCTCTGCGCGGATCATGACCACCGCCAATGAAATATTCAACACGCTATTTAGCTCACTGCGCTAG
Upstream 100 bases:
>100_bases GTCATGAAAACCATTACTCGAGACTTTAAAGATGTCTTGCAAGGGGTTAAGCAATGATGAATCGATTTGTTCAACCTCTT GAAGTAGGGAGCCAGCACTC
Downstream 100 bases:
>100_bases CAATGAATGCTTGAAGATTTAAGACTGGGTTAGGCACTGGATTTAGGAACAGGAATTAGAATTATGCGAATTTCTACTGC GCAAATGTTTCACCAAAACA
Product: flagellar hook-associated protein FlgK
Products: NA
Alternate protein names: HAP1 [H]
Number of amino acids: Translated: 639; Mature: 638
Protein sequence:
>639_residues MSLDLMNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNEFYGAGTYVSDVKRVYNDYATRELRIGS TAVSESQTTFSKMSQLDQLFSQMGKAVPQGLNDFFASMNALADIPNDMGLRGSFLTSANQLANSVNQMQSHLDSQMTQTN DQISAVTDRINEISNELGSINRELMKSQGQDMQLLDKQDALILELSEYASVNVIPLESGAKSIMLGGSMMLVSGEMSMQV GTAPGDPYPNELQITAQSGSKSMIVDASKMGGQLGALVNYRDETLIPSQMELGQFALGVSDAFNQAQAQGFDLNGQVGAN IFTDINDPSMQLGRVGALSSNTGTANLSVNIDDVGSLTGSSYELKFTAPSTYELKDAVSGNITPLTLNGTKLEGANGFSI NIDAGALASGDTFEIRPTSSAAVSLSVEMTDAKGIAAAGAKITADAANTGNSQVSLVSIDKRTETGFPVTGAELTFEIDP STTPPSYEVFDVDGASLGADTYTPPTISSHGFTFEIDSTATAAEKFTFDLSFAEGDNTNMVSMAKLSEAKLMNGGKTTLT DVFENTTIDVGSKTKSAEISMGSAEAIYKQAYTRVQSVSGVNLDEEAANLMRFQQSYQASARIMTTANEIFNTLFSSLR
Sequences:
>Translated_639_residues MSLDLMNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNEFYGAGTYVSDVKRVYNDYATRELRIGS TAVSESQTTFSKMSQLDQLFSQMGKAVPQGLNDFFASMNALADIPNDMGLRGSFLTSANQLANSVNQMQSHLDSQMTQTN DQISAVTDRINEISNELGSINRELMKSQGQDMQLLDKQDALILELSEYASVNVIPLESGAKSIMLGGSMMLVSGEMSMQV GTAPGDPYPNELQITAQSGSKSMIVDASKMGGQLGALVNYRDETLIPSQMELGQFALGVSDAFNQAQAQGFDLNGQVGAN IFTDINDPSMQLGRVGALSSNTGTANLSVNIDDVGSLTGSSYELKFTAPSTYELKDAVSGNITPLTLNGTKLEGANGFSI NIDAGALASGDTFEIRPTSSAAVSLSVEMTDAKGIAAAGAKITADAANTGNSQVSLVSIDKRTETGFPVTGAELTFEIDP STTPPSYEVFDVDGASLGADTYTPPTISSHGFTFEIDSTATAAEKFTFDLSFAEGDNTNMVSMAKLSEAKLMNGGKTTLT DVFENTTIDVGSKTKSAEISMGSAEAIYKQAYTRVQSVSGVNLDEEAANLMRFQQSYQASARIMTTANEIFNTLFSSLR >Mature_638_residues SLDLMNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNEFYGAGTYVSDVKRVYNDYATRELRIGST AVSESQTTFSKMSQLDQLFSQMGKAVPQGLNDFFASMNALADIPNDMGLRGSFLTSANQLANSVNQMQSHLDSQMTQTND QISAVTDRINEISNELGSINRELMKSQGQDMQLLDKQDALILELSEYASVNVIPLESGAKSIMLGGSMMLVSGEMSMQVG TAPGDPYPNELQITAQSGSKSMIVDASKMGGQLGALVNYRDETLIPSQMELGQFALGVSDAFNQAQAQGFDLNGQVGANI FTDINDPSMQLGRVGALSSNTGTANLSVNIDDVGSLTGSSYELKFTAPSTYELKDAVSGNITPLTLNGTKLEGANGFSIN IDAGALASGDTFEIRPTSSAAVSLSVEMTDAKGIAAAGAKITADAANTGNSQVSLVSIDKRTETGFPVTGAELTFEIDPS TTPPSYEVFDVDGASLGADTYTPPTISSHGFTFEIDSTATAAEKFTFDLSFAEGDNTNMVSMAKLSEAKLMNGGKTTLTD VFENTTIDVGSKTKSAEISMGSAEAIYKQAYTRVQSVSGVNLDEEAANLMRFQQSYQASARIMTTANEIFNTLFSSLR
Specific function: Unknown
COG id: COG1256
COG function: function code N; Flagellar hook-associated protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the flagella basal body rod proteins family [H]
Homologues:
Organism=Escherichia coli, GI1787323, Length=453, Percent_Identity=26.9315673289183, Blast_Score=159, Evalue=7e-40,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010930 - InterPro: IPR001444 - InterPro: IPR002371 [H]
Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]
EC number: NA
Molecular weight: Translated: 67704; Mature: 67573
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: PS00588 FLAGELLA_BB_ROD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLDLMNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNEFYGAGTY CCCCHHHHHHHCEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCH VSDVKRVYNDYATRELRIGSTAVSESQTTFSKMSQLDQLFSQMGKAVPQGLNDFFASMNA HHHHHHHHHHHCCCEEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LADIPNDMGLRGSFLTSANQLANSVNQMQSHLDSQMTQTNDQISAVTDRINEISNELGSI HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH NRELMKSQGQDMQLLDKQDALILELSEYASVNVIPLESGAKSIMLGGSMMLVSGEMSMQV HHHHHHCCCCCCCHHCCCCCEEEEEHHHCEEEEEECCCCCCEEEECCEEEEEECCCEEEE GTAPGDPYPNELQITAQSGSKSMIVDASKMGGQLGALVNYRDETLIPSQMELGQFALGVS ECCCCCCCCCCEEEEECCCCCEEEEEHHHCCCCEEHEEECCCCCCCCCHHHHHHHHCCHH DAFNQAQAQGFDLNGQVGANIFTDINDPSMQLGRVGALSSNTGTANLSVNIDDVGSLTGS HHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHCCEEEECCCCCEEEEEEECCCCCCCCCC SYELKFTAPSTYELKDAVSGNITPLTLNGTKLEGANGFSINIDAGALASGDTFEIRPTSS CEEEEEECCCCEEHHHHCCCCCEEEEECCCEECCCCCEEEEECCCCCCCCCEEEEECCCC AAVSLSVEMTDAKGIAAAGAKITADAANTGNSQVSLVSIDKRTETGFPVTGAELTFEIDP CEEEEEEEEECCCCEEECCCEEEECCCCCCCCEEEEEEEECCCCCCCCEECCEEEEEECC STTPPSYEVFDVDGASLGADTYTPPTISSHGFTFEIDSTATAAEKFTFDLSFAEGDNTNM CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCCCE VSMAKLSEAKLMNGGKTTLTDVFENTTIDVGSKTKSAEISMGSAEAIYKQAYTRVQSVSG EEEHHHHHHHHCCCCCCHHHHHHCCCEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHCC VNLDEEAANLMRFQQSYQASARIMTTANEIFNTLFSSLR CCCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCC >Mature Secondary Structure SLDLMNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNEFYGAGTY CCCHHHHHHHCEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCH VSDVKRVYNDYATRELRIGSTAVSESQTTFSKMSQLDQLFSQMGKAVPQGLNDFFASMNA HHHHHHHHHHHCCCEEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LADIPNDMGLRGSFLTSANQLANSVNQMQSHLDSQMTQTNDQISAVTDRINEISNELGSI HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH NRELMKSQGQDMQLLDKQDALILELSEYASVNVIPLESGAKSIMLGGSMMLVSGEMSMQV HHHHHHCCCCCCCHHCCCCCEEEEEHHHCEEEEEECCCCCCEEEECCEEEEEECCCEEEE GTAPGDPYPNELQITAQSGSKSMIVDASKMGGQLGALVNYRDETLIPSQMELGQFALGVS ECCCCCCCCCCEEEEECCCCCEEEEEHHHCCCCEEHEEECCCCCCCCCHHHHHHHHCCHH DAFNQAQAQGFDLNGQVGANIFTDINDPSMQLGRVGALSSNTGTANLSVNIDDVGSLTGS HHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHCCEEEECCCCCEEEEEEECCCCCCCCCC SYELKFTAPSTYELKDAVSGNITPLTLNGTKLEGANGFSINIDAGALASGDTFEIRPTSS CEEEEEECCCCEEHHHHCCCCCEEEEECCCEECCCCCEEEEECCCCCCCCCEEEEECCCC AAVSLSVEMTDAKGIAAAGAKITADAANTGNSQVSLVSIDKRTETGFPVTGAELTFEIDP CEEEEEEEEECCCCEEECCCEEEECCCCCCCCEEEEEEEECCCCCCCCEECCEEEEEECC STTPPSYEVFDVDGASLGADTYTPPTISSHGFTFEIDSTATAAEKFTFDLSFAEGDNTNM CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCCCE VSMAKLSEAKLMNGGKTTLTDVFENTTIDVGSKTKSAEISMGSAEAIYKQAYTRVQSVSG EEEHHHHHHHHCCCCCCHHHHHHCCCEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHCC VNLDEEAANLMRFQQSYQASARIMTTANEIFNTLFSSLR CCCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 8158647 [H]