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The map label for this gene is flgF [H]

Identifier: 167623362

GI number: 167623362

Start: 1727770

End: 1728513

Strand: Direct

Name: flgF [H]

Synonym: Shal_1431

Alternate gene names: 167623362

Gene position: 1727770-1728513 (Clockwise)

Preceding gene: 167623361

Following gene: 167623363

Centisome position: 33.06

GC content: 49.06

Gene sequence:

>744_bases
GTGGACAAATTGCTCTATGTCGCGATGAGCGGCGCAAAACAGAATATGAATTCGTTGGCGGTTAGTGCCAACAATTTGGC
CAACGCGAATACCGATGGCTTTAAATCCTCTCTTGCTCAAGCTCGCTCAATGCAAGCTTTTGGCGAAGGTCTGCCTACGC
GTGTGTTCTCGATGACTGAAACCCCGTCAGCTAATTTTTCCAGCGGTCCAATCAAAACTACTGGTCGTGATTTAGACATT
GCCGTTAAAGGTGATGGTTGGATTGCGGTGCAAGCCGAAAATGGCGGCGAAGCCTATACCCGCTCAGGCAGTTTACGTTT
CGATAACTCAGGTGTGCTGCGTAATGATAGAGGTACGCCAGTGATGGGCGACAATGGCCCTATTGTATTACCGCTGCCGA
TTGAAAAGGTCGAGATCTCTCAAGACGGTATCGTTTCTGTCCGTCCATCGGGGGCGACAGCTGAGGTGATTGAGGAAGTC
GGTCGTATTAAACTCGTTAACCCGGGTAACCAAAATTTAATGCGTGGGGAAGATGGCTTGTTTCGCTTAATGTCGGGTGA
AAATGCACCGTCTGACCCAAGCGTAGGTCTGCTTAGTGGCGCTGTCGAAGGCAGTAACGTCAATGCAGTCCATGAGATGG
TATCTATGATTGACCTACAGCGTCAGTTTGAGATGCAAGTGAAAATGATGAAAACAGCAGAAGAGAACGATCGCGCGTCC
TCTTCCTTAATGCGCATAAGCTAG

Upstream 100 bases:

>100_bases
CGTCTCAGCTTTAACCTAGAACCTAGGACCTTCTTTATCCCCATCTTTGGCACGATGTTTGCTATCTATTTCGTTAGACG
GAAGTTTGACGGAGTGTTAC

Downstream 100 bases:

>100_bases
GAGAGACACTATGCATCCCGCTTTATGGATAAGTAAGACTGGTTTAGACGCTCAGCAAACCGATATTTCAGTTATTTCTA
ACAACGTGGCTAACGCCAGT

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDKLLYVAMSGAKQNMNSLAVSANNLANANTDGFKSSLAQARSMQAFGEGLPTRVFSMTETPSANFSSGPIKTTGRDLDI
AVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDRGTPVMGDNGPIVLPLPIEKVEISQDGIVSVRPSGATAEVIEEV
GRIKLVNPGNQNLMRGEDGLFRLMSGENAPSDPSVGLLSGAVEGSNVNAVHEMVSMIDLQRQFEMQVKMMKTAEENDRAS
SSLMRIS

Sequences:

>Translated_247_residues
MDKLLYVAMSGAKQNMNSLAVSANNLANANTDGFKSSLAQARSMQAFGEGLPTRVFSMTETPSANFSSGPIKTTGRDLDI
AVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDRGTPVMGDNGPIVLPLPIEKVEISQDGIVSVRPSGATAEVIEEV
GRIKLVNPGNQNLMRGEDGLFRLMSGENAPSDPSVGLLSGAVEGSNVNAVHEMVSMIDLQRQFEMQVKMMKTAEENDRAS
SSLMRIS
>Mature_247_residues
MDKLLYVAMSGAKQNMNSLAVSANNLANANTDGFKSSLAQARSMQAFGEGLPTRVFSMTETPSANFSSGPIKTTGRDLDI
AVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDRGTPVMGDNGPIVLPLPIEKVEISQDGIVSVRPSGATAEVIEEV
GRIKLVNPGNQNLMRGEDGLFRLMSGENAPSDPSVGLLSGAVEGSNVNAVHEMVSMIDLQRQFEMQVKMMKTAEENDRAS
SSLMRIS

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=253, Percent_Identity=41.1067193675889, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1787318, Length=254, Percent_Identity=31.1023622047244, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 26284; Mature: 26284

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLLYVAMSGAKQNMNSLAVSANNLANANTDGFKSSLAQARSMQAFGEGLPTRVFSMTE
CCCEEEEEECCCCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
TPSANFSSGPIKTTGRDLDIAVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDRGTP
CCCCCCCCCCCEECCCEEEEEEECCCEEEEEECCCCCEEECCCCEEECCCCCEECCCCCE
VMGDNGPIVLPLPIEKVEISQDGIVSVRPSGATAEVIEEVGRIKLVNPGNQNLMRGEDGL
EECCCCCEEEECCCCEEEECCCCEEEECCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCE
FRLMSGENAPSDPSVGLLSGAVEGSNVNAVHEMVSMIDLQRQFEMQVKMMKTAEENDRAS
EEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
SSLMRIS
HHEEECC
>Mature Secondary Structure
MDKLLYVAMSGAKQNMNSLAVSANNLANANTDGFKSSLAQARSMQAFGEGLPTRVFSMTE
CCCEEEEEECCCCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
TPSANFSSGPIKTTGRDLDIAVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDRGTP
CCCCCCCCCCCEECCCEEEEEEECCCEEEEEECCCCCEEECCCCEEECCCCCEECCCCCE
VMGDNGPIVLPLPIEKVEISQDGIVSVRPSGATAEVIEEVGRIKLVNPGNQNLMRGEDGL
EECCCCCEEEECCCCEEEECCCCEEEECCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCE
FRLMSGENAPSDPSVGLLSGAVEGSNVNAVHEMVSMIDLQRQFEMQVKMMKTAEENDRAS
EEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
SSLMRIS
HHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]