| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is flgA
Identifier: 167623355
GI number: 167623355
Start: 1721153
End: 1721926
Strand: Reverse
Name: flgA
Synonym: Shal_1424
Alternate gene names: NA
Gene position: 1721926-1721153 (Counterclockwise)
Preceding gene: 167623406
Following gene: 167623354
Centisome position: 32.94
GC content: 44.19
Gene sequence:
>774_bases ATGACTGCAGTTCAGCACATAACACAATATAGTCGCATTTTAGCGAATCAAGCCACTGCATTCATTATGAAAATCTATTT TGGCTCATTTTTATTAATACTTTTGCTACCAACTTTAGCATACGCCACTACAGCTGCCAGTATTCCTTCTGTATCGACCA TCTCTCGATTAGCTATAGCGGCAGTTGAAGAAAAAATTGAGGCCCCTGCAAAAGCAAGGATTAATATCACACCCCAGAGT CTAGATACCCGTGTCAACCTGCCCAATTGTTACTTACCCATAACCGCTGAGATTGCCAGTGACCGCGCGATCCGCCGAAA CAATACCGTAAAAATCAGTTGTAATAGTCCTGACTTAAGTTATCCATGGCAGATGTTTGTATCCGTAAGAGTCGATATTC TGTACCCCGTTGTGGTCGCAAAATCGACCATGGGCCCAGGTGACCTTCTCTCTAGAGGTGATATTGAACTCGAATACATT GAACAAACCACATTACGGGGGCATCAATTTGAAGAGATCTCTGAAGTGGTGGGAGCGCGGCTAAAGCGACGCGTCGCACC TGGGCAACCGATTTTTGCCAACCAACTCTGTATTGTTTGTAAAGGTGATAGCGTGTCGATATATGCTCGTTCTGAAAACT TTGAAATTAAAACCGTTGGTGAAGCACTGCATGATGCTAATGTTGGCGATAAAGTTCGCATAAAGAACAGCCACTCGCAT AAAAACCTCGATGCACGCGTCACTGGCGTTGGCCAAGTCGAAGTAAGAATGTAA
Upstream 100 bases:
>100_bases CAACACTTTTAGGCACATTACTTGCTTATTTGAAGCTATCCAAGCGAGCATGGCTTTTTTCAGTCAAACTAATGACGCCA ACTAATCCAAAAGGATAAAG
Downstream 100 bases:
>100_bases GAATGTAAGAATGTAAGAATGTAAGAATGTAAGAATGTAAGAATGTAAGAATGTAAGAATGTAAAAATATAAAAAATCCT AAAGTAGCGAGTGATACTGC
Product: flagellar basal body P-ring biosynthesis protein FlgA
Products: NA
Alternate protein names: Flagella Basal Body P-Ring Formation Protein FlgA; Flagellar Basal-Body P-Ring Formation Protein FlgA; Flagellar Basal Body P-Ring Biosynthesis Protein; Flagellar Biosynthesis; SAF Domain-Containing Protein; Flagellar Protein; Flagellar Basal Body P-Ring Biosynthesis Protein-Like; Flageller Protein FlgA
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MTAVQHITQYSRILANQATAFIMKIYFGSFLLILLLPTLAYATTAASIPSVSTISRLAIAAVEEKIEAPAKARINITPQS LDTRVNLPNCYLPITAEIASDRAIRRNNTVKISCNSPDLSYPWQMFVSVRVDILYPVVVAKSTMGPGDLLSRGDIELEYI EQTTLRGHQFEEISEVVGARLKRRVAPGQPIFANQLCIVCKGDSVSIYARSENFEIKTVGEALHDANVGDKVRIKNSHSH KNLDARVTGVGQVEVRM
Sequences:
>Translated_257_residues MTAVQHITQYSRILANQATAFIMKIYFGSFLLILLLPTLAYATTAASIPSVSTISRLAIAAVEEKIEAPAKARINITPQS LDTRVNLPNCYLPITAEIASDRAIRRNNTVKISCNSPDLSYPWQMFVSVRVDILYPVVVAKSTMGPGDLLSRGDIELEYI EQTTLRGHQFEEISEVVGARLKRRVAPGQPIFANQLCIVCKGDSVSIYARSENFEIKTVGEALHDANVGDKVRIKNSHSH KNLDARVTGVGQVEVRM >Mature_256_residues TAVQHITQYSRILANQATAFIMKIYFGSFLLILLLPTLAYATTAASIPSVSTISRLAIAAVEEKIEAPAKARINITPQSL DTRVNLPNCYLPITAEIASDRAIRRNNTVKISCNSPDLSYPWQMFVSVRVDILYPVVVAKSTMGPGDLLSRGDIELEYIE QTTLRGHQFEEISEVVGARLKRRVAPGQPIFANQLCIVCKGDSVSIYARSENFEIKTVGEALHDANVGDKVRIKNSHSHK NLDARVTGVGQVEVRM
Specific function: Unknown
COG id: COG1261
COG function: function code NO; Flagellar basal body P-ring biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28327; Mature: 28196
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: PS50844 AFP_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVQHITQYSRILANQATAFIMKIYFGSFLLILLLPTLAYATTAASIPSVSTISRLAIA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AVEEKIEAPAKARINITPQSLDTRVNLPNCYLPITAEIASDRAIRRNNTVKISCNSPDLS HHHHHHCCCCCEEEEECHHCCCCEECCCCEEEEEEEECCCCCEEECCCEEEEEECCCCCC YPWQMFVSVRVDILYPVVVAKSTMGPGDLLSRGDIELEYIEQTTLRGHQFEEISEVVGAR CCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHH LKRRVAPGQPIFANQLCIVCKGDSVSIYARSENFEIKTVGEALHDANVGDKVRIKNSHSH HHHHCCCCCCEECCCEEEEEECCCEEEEEECCCCEEEEHHHHHHCCCCCCEEEEECCCCC KNLDARVTGVGQVEVRM CCCCEEEEECEEEEEEC >Mature Secondary Structure TAVQHITQYSRILANQATAFIMKIYFGSFLLILLLPTLAYATTAASIPSVSTISRLAIA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AVEEKIEAPAKARINITPQSLDTRVNLPNCYLPITAEIASDRAIRRNNTVKISCNSPDLS HHHHHHCCCCCEEEEECHHCCCCEECCCCEEEEEEEECCCCCEEECCCEEEEEECCCCCC YPWQMFVSVRVDILYPVVVAKSTMGPGDLLSRGDIELEYIEQTTLRGHQFEEISEVVGAR CCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHH LKRRVAPGQPIFANQLCIVCKGDSVSIYARSENFEIKTVGEALHDANVGDKVRIKNSHSH HHHHCCCCCCEECCCEEEEEECCCEEEEEECCCCEEEEHHHHHHCCCCCCEEEEECCCCC KNLDARVTGVGQVEVRM CCCCEEEEECEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA