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The map label for this gene is araC [C]

Identifier: 167623338

GI number: 167623338

Start: 1700241

End: 1701074

Strand: Reverse

Name: araC [C]

Synonym: Shal_1407

Alternate gene names: 167623338

Gene position: 1701074-1700241 (Counterclockwise)

Preceding gene: 167623349

Following gene: 167623337

Centisome position: 32.54

GC content: 37.05

Gene sequence:

>834_bases
ATGAATATACCTAATGTAATGTATCGGGAACGCCATGAAAAAATGGAACTGTTCTCTCTAGAGAGTTTCACTCAAAGAAG
CAAACTTTATTCGCCAGCACCTTCAGATTTACATCGTGTAGACTTTCACTGTTTACTTCGGCACAAGAGTCACGGAAGCC
ATTGTATTGACTTTAAAAACTATGAATATAAACCTGGCGACATGGTGTATATCGCTCCCGGACAAGTGCATGCCTACGAC
TTCAATAACACTCCTTGTGGAGAAGTGATTATTTTCACTAAGGCGTACTATCAAGAAATAAAATCTTACTTGCCTGATGA
TCCGCTACAACTCTGTAAGCAAGCGCCCGTTTGGCAGCCAGATCAGGCTCTCTCAGAAATTATTGACCGCACACTTGAGC
TTATTGACCTGCAGCAGCACTCTGCTTTGCCTAGTATCAGCAACAAACTCTTATTCACTAATCTTCTGGTAAATATCAGT
CAAACACAGAAAAAATTCATTACAGAACCACAGCAAAAATTTAAATATCAAGAGCTTATCACTTTAGTTTACAATAATAT
GAATACAACAAGGCATGCTAAAGATTATGCTAAATTAATGGCTATGAGTTATAGCAAACTCAATAATATTTGCTTAAAAG
CCAGTGGTAATACATTAAAGCGATCCATTGATAATCAAATAATACTGGAAGCTAAGCGAATTTTAGTCACTGAAAGCTTG
AATATCAATCAGTTATCTGAACATCTTGGCTTTGATGAAACGACTAATTTTGTCAAATTTTTTAATCGTCACACCGGCAT
CTCTCCTAAACAATTTCGTCAGCACCGATTGTAA

Upstream 100 bases:

>100_bases
ACCGTTACTTTTATCACTAATATATTAATAATAAACACCTTTATGAATATAATCATCATACTGATGAAGCTGAAATAGTA
AAACTTTCAATAAACATATA

Downstream 100 bases:

>100_bases
CATTTACCATTTTCGGCCCAAGTTTAACCTGCTAGGTTTCATTTAATGTCATTACTATATCAATATATTAACTAAGTAAA
TGGCCCCCTTAATGAATCTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Transcriptional Regulator; Transcriptional Regulator PobR; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; AraC Protein; AraC Family Regulatory Protein; Transcriptional Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; Vegetative Cell Wall; Regulatory Helix-Turn-Helix Protein AraC Family; AraC Family Transcription Regulator; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNIPNVMYRERHEKMELFSLESFTQRSKLYSPAPSDLHRVDFHCLLRHKSHGSHCIDFKNYEYKPGDMVYIAPGQVHAYD
FNNTPCGEVIIFTKAYYQEIKSYLPDDPLQLCKQAPVWQPDQALSEIIDRTLELIDLQQHSALPSISNKLLFTNLLVNIS
QTQKKFITEPQQKFKYQELITLVYNNMNTTRHAKDYAKLMAMSYSKLNNICLKASGNTLKRSIDNQIILEAKRILVTESL
NINQLSEHLGFDETTNFVKFFNRHTGISPKQFRQHRL

Sequences:

>Translated_277_residues
MNIPNVMYRERHEKMELFSLESFTQRSKLYSPAPSDLHRVDFHCLLRHKSHGSHCIDFKNYEYKPGDMVYIAPGQVHAYD
FNNTPCGEVIIFTKAYYQEIKSYLPDDPLQLCKQAPVWQPDQALSEIIDRTLELIDLQQHSALPSISNKLLFTNLLVNIS
QTQKKFITEPQQKFKYQELITLVYNNMNTTRHAKDYAKLMAMSYSKLNNICLKASGNTLKRSIDNQIILEAKRILVTESL
NINQLSEHLGFDETTNFVKFFNRHTGISPKQFRQHRL
>Mature_277_residues
MNIPNVMYRERHEKMELFSLESFTQRSKLYSPAPSDLHRVDFHCLLRHKSHGSHCIDFKNYEYKPGDMVYIAPGQVHAYD
FNNTPCGEVIIFTKAYYQEIKSYLPDDPLQLCKQAPVWQPDQALSEIIDRTLELIDLQQHSALPSISNKLLFTNLLVNIS
QTQKKFITEPQQKFKYQELITLVYNNMNTTRHAKDYAKLMAMSYSKLNNICLKASGNTLKRSIDNQIILEAKRILVTESL
NINQLSEHLGFDETTNFVKFFNRHTGISPKQFRQHRL

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32362; Mature: 32362

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPNVMYRERHEKMELFSLESFTQRSKLYSPAPSDLHRVDFHCLLRHKSHGSHCIDFKN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC
YEYKPGDMVYIAPGQVHAYDFNNTPCGEVIIFTKAYYQEIKSYLPDDPLQLCKQAPVWQP
CCCCCCCEEEECCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHCCCCCCH
DQALSEIIDRTLELIDLQQHSALPSISNKLLFTNLLVNISQTQKKFITEPQQKFKYQELI
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
TLVYNNMNTTRHAKDYAKLMAMSYSKLNNICLKASGNTLKRSIDNQIILEAKRILVTESL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHCCHHHHHHHHHHEECCC
NINQLSEHLGFDETTNFVKFFNRHTGISPKQFRQHRL
CHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure
MNIPNVMYRERHEKMELFSLESFTQRSKLYSPAPSDLHRVDFHCLLRHKSHGSHCIDFKN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC
YEYKPGDMVYIAPGQVHAYDFNNTPCGEVIIFTKAYYQEIKSYLPDDPLQLCKQAPVWQP
CCCCCCCEEEECCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHCCCCCCH
DQALSEIIDRTLELIDLQQHSALPSISNKLLFTNLLVNISQTQKKFITEPQQKFKYQELI
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
TLVYNNMNTTRHAKDYAKLMAMSYSKLNNICLKASGNTLKRSIDNQIILEAKRILVTESL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHCCHHHHHHHHHHEECCC
NINQLSEHLGFDETTNFVKFFNRHTGISPKQFRQHRL
CHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA