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The map label for this gene is kdsB [H]

Identifier: 167623326

GI number: 167623326

Start: 1684245

End: 1685453

Strand: Reverse

Name: kdsB [H]

Synonym: Shal_1395

Alternate gene names: 167623326

Gene position: 1685453-1684245 (Counterclockwise)

Preceding gene: 167623327

Following gene: 167623323

Centisome position: 32.25

GC content: 41.36

Gene sequence:

>1209_bases
ATGAACGTCATTGCAATTATTGGTGCTCGACTAAACTCGAGTCGCCTCCCAGGAAAACATCTACTTCCGCTTGCTGGGAA
GCCTATCATTCAGCATATCCAGAATCGTCTCGAACGCTGTAAGACACTAACAGATATCGTACTGGCAACCACCTTGGATG
ATTTCAATCGACCACTCATAGAGTGGGCTAACAATAATAGCCAATGTGTCGCCTATTCCGGTGACGTTAACAACTTGATG
GGAAGGATAAATGAGGTCGTTGAGCAATATAAAGCTGATCTTGTAGTGTATATTTGTGGAGATTGCCCGCTTATTGATCC
CGAGTTTATCGATCACGCCGTTAGCCAATTATGTCAAAACCCGGACGCAAACAGTATCGCACTGGCGCAAAATGTACGCT
CTATACACGAAGGAATGGCTTTTTATACGCGCCAAGGTTGGGATAGCTTATTTGTTAATAGCATTAGCGAGATGGAAAAA
GAACATGTCGGATATGCCAATCAAAGGCGCCATTGTCTTACCGCCCTCTCCATCCAAGATAGCGATGACTTTTCAGGCGT
TGAACATAGGATATCTGTTGATACCGATGCCGATTATCGCTTTATGCAGCAGATATATCAGCGCTGGGGTCAGAAGCATG
GCTCCGACTCTATAGTGTCACTTAAATGGGTAGTGCAAACACTCAAAAAAGAAGCTTCACTTAGGCAGATAAATGCCCAT
GTTAAGCAGAAAAAAGCAGATCAAAAATATCAATCAGTCTCACTTTATTGTGTTTATCAAGCGCCTGATGACGCCTTATA
TCAGCTCAGTGTAAAACTTGGCTCTGCACTGCAAGAGCACTACGGCTTAGGTACTCAGCTTCATGTGCTATCCAAAGAGT
CACTTCAGGCCACATTGTCACAAAACATCCAAACCTATTGTGATGAACAGTTATTTATCCAAGCATTGAAACATGACAAT
AAGCGCTTATCTCTTTGCCTCATTCCTTCTCAATTACAACATAAACTCGAGCAATTTAAGCATGAGTTTTCTGGTAGTAA
CGGTCTTGTTATTGAGTTTTATAGTTCAGAAGAGCATAGTGGACAGTCGCAAGCATTAGCATTCATTAGGAAAAATAACC
AACAAAATCAGACCAATAGTAAAGATAGTTTAATTAATGAGTTGACACTAAATGCACTCAGACAACTCATAACGAGTTTA
ATAAGATAG

Upstream 100 bases:

>100_bases
TTCGCTCTCCGAGGCTGACGAAACACTCAAAGCAGATGGCCAGCTTTTGAATTTCAGCTATCAGATCACCCCATGCTTTA
AAACGGATATCAGTTAAGTC

Downstream 100 bases:

>100_bases
CGGCTATCAGTGATCGCCGCTATTAACGCCTCTGAGCCTAGTTTATCGAGGTATAAAAGACTTAAGCTGCTCACAAATAT
AATCGAGTTGAGCGAACTCT

Product: acylneuraminate cytidylyltransferase

Products: NA

Alternate protein names: CMP-2-keto-3-deoxyoctulosonic acid synthase; CKS; CMP-KDO synthase [H]

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNVIAIIGARLNSSRLPGKHLLPLAGKPIIQHIQNRLERCKTLTDIVLATTLDDFNRPLIEWANNNSQCVAYSGDVNNLM
GRINEVVEQYKADLVVYICGDCPLIDPEFIDHAVSQLCQNPDANSIALAQNVRSIHEGMAFYTRQGWDSLFVNSISEMEK
EHVGYANQRRHCLTALSIQDSDDFSGVEHRISVDTDADYRFMQQIYQRWGQKHGSDSIVSLKWVVQTLKKEASLRQINAH
VKQKKADQKYQSVSLYCVYQAPDDALYQLSVKLGSALQEHYGLGTQLHVLSKESLQATLSQNIQTYCDEQLFIQALKHDN
KRLSLCLIPSQLQHKLEQFKHEFSGSNGLVIEFYSSEEHSGQSQALAFIRKNNQQNQTNSKDSLINELTLNALRQLITSL
IR

Sequences:

>Translated_402_residues
MNVIAIIGARLNSSRLPGKHLLPLAGKPIIQHIQNRLERCKTLTDIVLATTLDDFNRPLIEWANNNSQCVAYSGDVNNLM
GRINEVVEQYKADLVVYICGDCPLIDPEFIDHAVSQLCQNPDANSIALAQNVRSIHEGMAFYTRQGWDSLFVNSISEMEK
EHVGYANQRRHCLTALSIQDSDDFSGVEHRISVDTDADYRFMQQIYQRWGQKHGSDSIVSLKWVVQTLKKEASLRQINAH
VKQKKADQKYQSVSLYCVYQAPDDALYQLSVKLGSALQEHYGLGTQLHVLSKESLQATLSQNIQTYCDEQLFIQALKHDN
KRLSLCLIPSQLQHKLEQFKHEFSGSNGLVIEFYSSEEHSGQSQALAFIRKNNQQNQTNSKDSLINELTLNALRQLITSL
IR
>Mature_402_residues
MNVIAIIGARLNSSRLPGKHLLPLAGKPIIQHIQNRLERCKTLTDIVLATTLDDFNRPLIEWANNNSQCVAYSGDVNNLM
GRINEVVEQYKADLVVYICGDCPLIDPEFIDHAVSQLCQNPDANSIALAQNVRSIHEGMAFYTRQGWDSLFVNSISEMEK
EHVGYANQRRHCLTALSIQDSDDFSGVEHRISVDTDADYRFMQQIYQRWGQKHGSDSIVSLKWVVQTLKKEASLRQINAH
VKQKKADQKYQSVSLYCVYQAPDDALYQLSVKLGSALQEHYGLGTQLHVLSKESLQATLSQNIQTYCDEQLFIQALKHDN
KRLSLCLIPSQLQHKLEQFKHEFSGSNGLVIEFYSSEEHSGQSQALAFIRKNNQQNQTNSKDSLINELTLNALRQLITSL
IR

Specific function: Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria [H]

COG id: COG1861

COG function: function code M; Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdsB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003329
- InterPro:   IPR004528 [H]

Pfam domain/function: PF02348 CTP_transf_3 [H]

EC number: =2.7.7.38 [H]

Molecular weight: Translated: 45587; Mature: 45587

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVIAIIGARLNSSRLPGKHLLPLAGKPIIQHIQNRLERCKTLTDIVLATTLDDFNRPLI
CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EWANNNSQCVAYSGDVNNLMGRINEVVEQYKADLVVYICGDCPLIDPEFIDHAVSQLCQN
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCC
PDANSIALAQNVRSIHEGMAFYTRQGWDSLFVNSISEMEKEHVGYANQRRHCLTALSIQD
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEEECC
SDDFSGVEHRISVDTDADYRFMQQIYQRWGQKHGSDSIVSLKWVVQTLKKEASLRQINAH
CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VKQKKADQKYQSVSLYCVYQAPDDALYQLSVKLGSALQEHYGLGTQLHVLSKESLQATLS
HHHHHHHHHHHCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
QNIQTYCDEQLFIQALKHDNKRLSLCLIPSQLQHKLEQFKHEFSGSNGLVIEFYSSEEHS
HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
GQSQALAFIRKNNQQNQTNSKDSLINELTLNALRQLITSLIR
CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNVIAIIGARLNSSRLPGKHLLPLAGKPIIQHIQNRLERCKTLTDIVLATTLDDFNRPLI
CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EWANNNSQCVAYSGDVNNLMGRINEVVEQYKADLVVYICGDCPLIDPEFIDHAVSQLCQN
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCC
PDANSIALAQNVRSIHEGMAFYTRQGWDSLFVNSISEMEKEHVGYANQRRHCLTALSIQD
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEEECC
SDDFSGVEHRISVDTDADYRFMQQIYQRWGQKHGSDSIVSLKWVVQTLKKEASLRQINAH
CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VKQKKADQKYQSVSLYCVYQAPDDALYQLSVKLGSALQEHYGLGTQLHVLSKESLQATLS
HHHHHHHHHHHCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
QNIQTYCDEQLFIQALKHDNKRLSLCLIPSQLQHKLEQFKHEFSGSNGLVIEFYSSEEHS
HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
GQSQALAFIRKNNQQNQTNSKDSLINELTLNALRQLITSLIR
CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA