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The map label for this gene is yciR [C]

Identifier: 167623226

GI number: 167623226

Start: 1573997

End: 1575580

Strand: Direct

Name: yciR [C]

Synonym: Shal_1293

Alternate gene names: 167623226

Gene position: 1573997-1575580 (Clockwise)

Preceding gene: 167623225

Following gene: 167623227

Centisome position: 30.11

GC content: 29.1

Gene sequence:

>1584_bases
ATGTATTATAATGTTTATCAACCAGTTTATTATAAAGATGAAATCTTCTCATATGAAGTTCTGCTAAGAAAGAATGGAGT
GGAGAACATTTCTGAGCACATAACAACAATTGTAAATAAATCATTATTTGATTACGAATGTATCGTTAGAACTGTTTTGG
AAAATAAAGATAAAGAGGTATTGTTGTTTGTTAATATTCACCCTGAGTCGTTACTTAATAGTCTTTTTGTAGAACACTTG
CTTAAAATGAAAGATGTTTTTTCTTGGGTATATTTTGAACTAATTGAGTCTGAAATAAAAAGTTGTGATGTAGAAACTAT
CAAGGAAAACATGTATGTTCTCCGTCATCAAGGTGCAAAATTTGCTCTTGATGACTTCGGAGCAAATTTTTCCAATATAG
AACGGTTAATAAATTTTGAATTTGAATTTGTTAAAGTTGATGCTTGCTTTATTCGAAATATAAGTCATAGCTACTTCTCT
TTTTCTATCTTAATTGGAGTTTTAAACTCAATAACGAATAGTTTTCCAGATTCAAATATTGTTATTGAGGGTATTGAGAC
AAAGAAACAGCATCAGGTAGTAAATGCTATTGAAATTTATTTAAAGAAAACTTTACTAAGACAAGGATATTATTATGGTT
ATCCTGAAAGAGATATTGGTATGTCGGTTAAAGAAATTTCATTACAATTACTCCAAATAGGAAATCAAAGTAAAAAGGCA
TTTTTTTGGCGTAATCTATATCTCGATATAATTAGTGATGATAGTGATGATAGTGATGATAGTGATGATAGTGATGATAG
TGATCATGAGATAATAAATCTATTGTCACATGCTGAAAAAGGTGCGTTTTCTGAAGTATTAATGAAAATTGATTCAATGG
ATGCATTGTTTTTATTGAAAAATAGTTGTGGTGATATCTTATATCATAATAAATCGAATAGAGTGATGCTTGGTACCGAT
AAATTTGAACTTAGTCAGCGGGAAGTTTTGAATTTGAATTCAAATTATGCAAACTGTGTTGATTCAGATAAATATTTTTT
AAACTCTAAAAAGATACAGTCTCAAGTTAGCGAAGTATTTGATGGCGAACATTTTGATGTTTATAGAATCAATATTTCAG
ATGATAACTCGCAGATGATATCTATCATAACTAAGGGTGTAGAACCAATTAATATTGATTATTTAACTGGTTTTTTTACT
CGGCATGATTTCAGTAAGTATACATGGGCAAAAAGTGTTACGTTTATAGATTTAGATAATTTAAAGCGGTTAAATGATAA
ACATGGGTATGACTATGCTGATGAGATGATTTTGAGATTTTCTGCTGCATTAAAAGAACATGTAAGGTCAAGTGATTTGA
TTGTTCGATATGGTGGAGACGAATTCATAATCTTCCATGATACAGAAGATGTTAATGCTATAACTAAAAGGTTGCATATG
ATAAATGTTTTTTTGAAAGGTAGCATTCAATTTTCATTTGGAACGAGCATAGTAAATACAAGTTTATTAAATACAATATC
TTTAGCGTCAGGAGTAATGCAGAAAATGAAAAGGAGAAGAAAACAAAATGAATGTCTTATCTAA

Upstream 100 bases:

>100_bases
CATTCCTGATGGTAAGTTTATTTTCCTGAAACAATAAAAATCATTCTTATTTTGAATAGATATAGGCAGTTTATAGATTA
AATAGGAAGGTGTGTTCTAG

Downstream 100 bases:

>100_bases
GGTCTACTTTGAACATATTTCAGAAAATTATTTAATTGTAATGAATATTGACAGACTTAATCCGATTGATATGAATATTA
TAATAGAAGAAATTTATTCC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: Diguanylate Cyclase/Phosphodiesterase; GGDEF Domain-Containing Protein; Signal Transduction Protein; Cyclic Nucleotide Phosphodiesterase; Diguanylate Cyclase Domain Protein; PleD-Related Protein; Signaling Protein; Sensory Box/Ggdef Family Protein; GGDEF Family Protein; Sensory Box Histidine Kinase; Ggdef Domain Protein; Diguanylate Cyclase With GAF Sensor; GGDEF/EAL Domain-Containing Protein

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MYYNVYQPVYYKDEIFSYEVLLRKNGVENISEHITTIVNKSLFDYECIVRTVLENKDKEVLLFVNIHPESLLNSLFVEHL
LKMKDVFSWVYFELIESEIKSCDVETIKENMYVLRHQGAKFALDDFGANFSNIERLINFEFEFVKVDACFIRNISHSYFS
FSILIGVLNSITNSFPDSNIVIEGIETKKQHQVVNAIEIYLKKTLLRQGYYYGYPERDIGMSVKEISLQLLQIGNQSKKA
FFWRNLYLDIISDDSDDSDDSDDSDDSDHEIINLLSHAEKGAFSEVLMKIDSMDALFLLKNSCGDILYHNKSNRVMLGTD
KFELSQREVLNLNSNYANCVDSDKYFLNSKKIQSQVSEVFDGEHFDVYRINISDDNSQMISIITKGVEPINIDYLTGFFT
RHDFSKYTWAKSVTFIDLDNLKRLNDKHGYDYADEMILRFSAALKEHVRSSDLIVRYGGDEFIIFHDTEDVNAITKRLHM
INVFLKGSIQFSFGTSIVNTSLLNTISLASGVMQKMKRRRKQNECLI

Sequences:

>Translated_527_residues
MYYNVYQPVYYKDEIFSYEVLLRKNGVENISEHITTIVNKSLFDYECIVRTVLENKDKEVLLFVNIHPESLLNSLFVEHL
LKMKDVFSWVYFELIESEIKSCDVETIKENMYVLRHQGAKFALDDFGANFSNIERLINFEFEFVKVDACFIRNISHSYFS
FSILIGVLNSITNSFPDSNIVIEGIETKKQHQVVNAIEIYLKKTLLRQGYYYGYPERDIGMSVKEISLQLLQIGNQSKKA
FFWRNLYLDIISDDSDDSDDSDDSDDSDHEIINLLSHAEKGAFSEVLMKIDSMDALFLLKNSCGDILYHNKSNRVMLGTD
KFELSQREVLNLNSNYANCVDSDKYFLNSKKIQSQVSEVFDGEHFDVYRINISDDNSQMISIITKGVEPINIDYLTGFFT
RHDFSKYTWAKSVTFIDLDNLKRLNDKHGYDYADEMILRFSAALKEHVRSSDLIVRYGGDEFIIFHDTEDVNAITKRLHM
INVFLKGSIQFSFGTSIVNTSLLNTISLASGVMQKMKRRRKQNECLI
>Mature_527_residues
MYYNVYQPVYYKDEIFSYEVLLRKNGVENISEHITTIVNKSLFDYECIVRTVLENKDKEVLLFVNIHPESLLNSLFVEHL
LKMKDVFSWVYFELIESEIKSCDVETIKENMYVLRHQGAKFALDDFGANFSNIERLINFEFEFVKVDACFIRNISHSYFS
FSILIGVLNSITNSFPDSNIVIEGIETKKQHQVVNAIEIYLKKTLLRQGYYYGYPERDIGMSVKEISLQLLQIGNQSKKA
FFWRNLYLDIISDDSDDSDDSDDSDDSDHEIINLLSHAEKGAFSEVLMKIDSMDALFLLKNSCGDILYHNKSNRVMLGTD
KFELSQREVLNLNSNYANCVDSDKYFLNSKKIQSQVSEVFDGEHFDVYRINISDDNSQMISIITKGVEPINIDYLTGFFT
RHDFSKYTWAKSVTFIDLDNLKRLNDKHGYDYADEMILRFSAALKEHVRSSDLIVRYGGDEFIIFHDTEDVNAITKRLHM
INVFLKGSIQFSFGTSIVNTSLLNTISLASGVMQKMKRRRKQNECLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61155; Mature: 61155

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYNVYQPVYYKDEIFSYEVLLRKNGVENISEHITTIVNKSLFDYECIVRTVLENKDKEV
CCEECCCCEEECCHHHEEEHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEE
LLFVNIHPESLLNSLFVEHLLKMKDVFSWVYFELIESEIKSCDVETIKENMYVLRHQGAK
EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEECCCE
FALDDFGANFSNIERLINFEFEFVKVDACFIRNISHSYFSFSILIGVLNSITNSFPDSNI
EEHHHCCCCHHHHHHHHCCEEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCE
VIEGIETKKQHQVVNAIEIYLKKTLLRQGYYYGYPERDIGMSVKEISLQLLQIGNQSKKA
EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCE
FFWRNLYLDIISDDSDDSDDSDDSDDSDHEIINLLSHAEKGAFSEVLMKIDSMDALFLLK
EEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEC
NSCGDILYHNKSNRVMLGTDKFELSQREVLNLNSNYANCVDSDKYFLNSKKIQSQVSEVF
CCCCCEEEECCCCEEEEECCCHHCCHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
DGEHFDVYRINISDDNSQMISIITKGVEPINIDYLTGFFTRHDFSKYTWAKSVTFIDLDN
CCCCEEEEEEEECCCCHHHHHHHHCCCCCEEEHHHHHHHHHCCCCHHHHHCCEEEEEHHH
LKRLNDKHGYDYADEMILRFSAALKEHVRSSDLIVRYGGDEFIIFHDTEDVNAITKRLHM
HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHH
INVFLKGSIQFSFGTSIVNTSLLNTISLASGVMQKMKRRRKQNECLI
HEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MYYNVYQPVYYKDEIFSYEVLLRKNGVENISEHITTIVNKSLFDYECIVRTVLENKDKEV
CCEECCCCEEECCHHHEEEHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEE
LLFVNIHPESLLNSLFVEHLLKMKDVFSWVYFELIESEIKSCDVETIKENMYVLRHQGAK
EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEECCCE
FALDDFGANFSNIERLINFEFEFVKVDACFIRNISHSYFSFSILIGVLNSITNSFPDSNI
EEHHHCCCCHHHHHHHHCCEEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCE
VIEGIETKKQHQVVNAIEIYLKKTLLRQGYYYGYPERDIGMSVKEISLQLLQIGNQSKKA
EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCE
FFWRNLYLDIISDDSDDSDDSDDSDDSDHEIINLLSHAEKGAFSEVLMKIDSMDALFLLK
EEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEC
NSCGDILYHNKSNRVMLGTDKFELSQREVLNLNSNYANCVDSDKYFLNSKKIQSQVSEVF
CCCCCEEEECCCCEEEEECCCHHCCHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
DGEHFDVYRINISDDNSQMISIITKGVEPINIDYLTGFFTRHDFSKYTWAKSVTFIDLDN
CCCCEEEEEEEECCCCHHHHHHHHCCCCCEEEHHHHHHHHHCCCCHHHHHCCEEEEEHHH
LKRLNDKHGYDYADEMILRFSAALKEHVRSSDLIVRYGGDEFIIFHDTEDVNAITKRLHM
HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHH
INVFLKGSIQFSFGTSIVNTSLLNTISLASGVMQKMKRRRKQNECLI
HEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA