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The map label for this gene is ykgD [H]

Identifier: 167623220

GI number: 167623220

Start: 1567718

End: 1568530

Strand: Reverse

Name: ykgD [H]

Synonym: Shal_1286

Alternate gene names: 167623220

Gene position: 1568530-1567718 (Counterclockwise)

Preceding gene: 167623224

Following gene: 167623215

Centisome position: 30.01

GC content: 42.68

Gene sequence:

>813_bases
ATGGATACCTTATCCGCATTAATATCTCACGCAGAACCAAAAGCGAACTTATTCTTCTCAGGTAATTTATGTGGAAGTTC
TTCAAGTGCAGAGCACCCTACTGGTGGAGTACTACACTTAGTTCGCACAGGTGAAATGGCTCTATTCGAAGAGCATGGCT
TAACATATAAAATCAACGAGCCAACACTCATCATTTATCCCAAAGGAAAAGCTCATCGTCTTCAGCCCCAAACTCTAGAA
GGTTGCGATGTAGTATGTGCTAACTTAAGCTTTAAAGATTCGCCACTATACCGAGCTCTACCCGATGCTATCGTTCTCCC
TCTTTCCGAGTTAGATAGTCTATCCAATACAATAAATATGTTATTTGACGAAGCTTTTACCTCACGTTTTGCTCAAGCAG
CTATCATCTCAACACTACTTGATCTGCTGTTGTTACTGGTGCTCCGTCATTTAGTTGAAAACAAAATATGTCAAGAGGGA
GTCTTATCAGCGTTATCTGAACCTAAACTTTCCAAAGCTATTGAACTGATCCATAAACAGCTAGATTATCCATGGACGAT
TGAGGAGTTAGCTAACCAAGTTGGTATGTCACGTGCTAGATTTGCGGCGCTATTTCATCACGTAATAGGACAGCCACCAC
TTAACTACGTCACCGAGTCACGGCTACTGTTAGCCAAAAAGTTACTGCTGAAGGGAGCTCCCATCAAATCGGTATGCTTA
GAGGTGGGGTATAGCGGGAGTGTTGCATTTTCGCGTGCATTTCAACGTCAATTCGGTATAACTCCGCGAAGCTGGCATAA
GGAACACAGCTAA

Upstream 100 bases:

>100_bases
CTGAGCTCCTTTGATTAAGTGAATTTACGTTATTGATATTGACACTCTCAACAATACGATTTATCACTATTAATCTAGAT
ATACATACTCAGAGTCTCAA

Downstream 100 bases:

>100_bases
GCAGCCACAAAAAAACCTGCACTAGGCAGGTTTTCTTTTACATCAAAACGCTTCTAACTGCTTGGCAGTTCGATTAGTTC
TGTTTTCTTACAAACTTAGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MDTLSALISHAEPKANLFFSGNLCGSSSSAEHPTGGVLHLVRTGEMALFEEHGLTYKINEPTLIIYPKGKAHRLQPQTLE
GCDVVCANLSFKDSPLYRALPDAIVLPLSELDSLSNTINMLFDEAFTSRFAQAAIISTLLDLLLLLVLRHLVENKICQEG
VLSALSEPKLSKAIELIHKQLDYPWTIEELANQVGMSRARFAALFHHVIGQPPLNYVTESRLLLAKKLLLKGAPIKSVCL
EVGYSGSVAFSRAFQRQFGITPRSWHKEHS

Sequences:

>Translated_270_residues
MDTLSALISHAEPKANLFFSGNLCGSSSSAEHPTGGVLHLVRTGEMALFEEHGLTYKINEPTLIIYPKGKAHRLQPQTLE
GCDVVCANLSFKDSPLYRALPDAIVLPLSELDSLSNTINMLFDEAFTSRFAQAAIISTLLDLLLLLVLRHLVENKICQEG
VLSALSEPKLSKAIELIHKQLDYPWTIEELANQVGMSRARFAALFHHVIGQPPLNYVTESRLLLAKKLLLKGAPIKSVCL
EVGYSGSVAFSRAFQRQFGITPRSWHKEHS
>Mature_270_residues
MDTLSALISHAEPKANLFFSGNLCGSSSSAEHPTGGVLHLVRTGEMALFEEHGLTYKINEPTLIIYPKGKAHRLQPQTLE
GCDVVCANLSFKDSPLYRALPDAIVLPLSELDSLSNTINMLFDEAFTSRFAQAAIISTLLDLLLLLVLRHLVENKICQEG
VLSALSEPKLSKAIELIHKQLDYPWTIEELANQVGMSRARFAALFHHVIGQPPLNYVTESRLLLAKKLLLKGAPIKSVCL
EVGYSGSVAFSRAFQRQFGITPRSWHKEHS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=282, Percent_Identity=28.7234042553192, Blast_Score=100, Evalue=8e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29814; Mature: 29814

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLSALISHAEPKANLFFSGNLCGSSSSAEHPTGGVLHLVRTGEMALFEEHGLTYKINE
CCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCEEEECC
PTLIIYPKGKAHRLQPQTLEGCDVVCANLSFKDSPLYRALPDAIVLPLSELDSLSNTINM
CEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCHHHHHCHHHHHHHHHHHHH
LFDEAFTSRFAQAAIISTLLDLLLLLVLRHLVENKICQEGVLSALSEPKLSKAIELIHKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LDYPWTIEELANQVGMSRARFAALFHHVIGQPPLNYVTESRLLLAKKLLLKGAPIKSVCL
CCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
EVGYSGSVAFSRAFQRQFGITPRSWHKEHS
HCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDTLSALISHAEPKANLFFSGNLCGSSSSAEHPTGGVLHLVRTGEMALFEEHGLTYKINE
CCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCEEEECC
PTLIIYPKGKAHRLQPQTLEGCDVVCANLSFKDSPLYRALPDAIVLPLSELDSLSNTINM
CEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCHHHHHCHHHHHHHHHHHHH
LFDEAFTSRFAQAAIISTLLDLLLLLVLRHLVENKICQEGVLSALSEPKLSKAIELIHKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LDYPWTIEELANQVGMSRARFAALFHHVIGQPPLNYVTESRLLLAKKLLLKGAPIKSVCL
CCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
EVGYSGSVAFSRAFQRQFGITPRSWHKEHS
HCCCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]