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The map label for this gene is oprF [H]

Identifier: 167623118

GI number: 167623118

Start: 1435899

End: 1436498

Strand: Direct

Name: oprF [H]

Synonym: Shal_1184

Alternate gene names: 167623118

Gene position: 1435899-1436498 (Clockwise)

Preceding gene: 167623117

Following gene: 167623119

Centisome position: 27.47

GC content: 50.17

Gene sequence:

>600_bases
ATGACAAAGTTAACACTCGTTTTGATTATTACCATACTCTTGTCGGCGGCCCTAGGGGCCCAGCCGTGGCAAGATAGCGA
TCTTGATGGCGTACCAGATCTGAAAGATGCTTGTGCGGCGACGCCGCCTAACACAGTGGTCGATGCCAATGGTTGTGAGA
AAGCACTTGCCAATGAGCGAGGACTGACCCCGTCAATTGCTATCACGCCAGACTTATGTCTAAGGACGAACGGTGGCAAG
CGATATCCTGCGGTATGTACAAAGCTGTCATCTATTGCGGTTAAGTTTGAGTTTGCCCGTGCAGATGTTCTACTCAGCCA
GGCTCAGACGCTTGAGGTGATAGCGCGCTGGCTTAAATCGACTGGGGGGGATTTACTGCTCGTTGGTCATACGGATTCGG
TAGGTAGCCCCGCTTATAATTTACAGCTGTCATTTGAGCGAGCGGAACAGGTTAAAAATGTATTAGTCGAGCAGTTTGGT
TTGCTTGCGAGCAGATTTCAGGTGGTTGGTGTTGGCAGTGCAGAGCCTATCGCCGATAACCGAACTCGACAGGGGCGAGA
GCAGAATCGTCGAGTCGAGTTTTTAGTTATTGTTCAATAG

Upstream 100 bases:

>100_bases
AATCACTGATATCGGTTGGGAATACAGTTATATGCGGTTGAATATGATGCTTATCATCTAAACCATAGCAGAGTGTAATG
GGCGAGATAGGTGAAACATG

Downstream 100 bases:

>100_bases
TTTTATCTTAAATTTGAGGGAGTATATAAATGGATAACTTGCAAGGTTTAATGGAGCAAGCACCAGAGTTAATCGTCACC
TACGGCATGAAAGTACTGTT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MTKLTLVLIITILLSAALGAQPWQDSDLDGVPDLKDACAATPPNTVVDANGCEKALANERGLTPSIAITPDLCLRTNGGK
RYPAVCTKLSSIAVKFEFARADVLLSQAQTLEVIARWLKSTGGDLLLVGHTDSVGSPAYNLQLSFERAEQVKNVLVEQFG
LLASRFQVVGVGSAEPIADNRTRQGREQNRRVEFLVIVQ

Sequences:

>Translated_199_residues
MTKLTLVLIITILLSAALGAQPWQDSDLDGVPDLKDACAATPPNTVVDANGCEKALANERGLTPSIAITPDLCLRTNGGK
RYPAVCTKLSSIAVKFEFARADVLLSQAQTLEVIARWLKSTGGDLLLVGHTDSVGSPAYNLQLSFERAEQVKNVLVEQFG
LLASRFQVVGVGSAEPIADNRTRQGREQNRRVEFLVIVQ
>Mature_198_residues
TKLTLVLIITILLSAALGAQPWQDSDLDGVPDLKDACAATPPNTVVDANGCEKALANERGLTPSIAITPDLCLRTNGGKR
YPAVCTKLSSIAVKFEFARADVLLSQAQTLEVIARWLKSTGGDLLLVGHTDSVGSPAYNLQLSFERAEQVKNVLVEQFGL
LASRFQVVGVGSAEPIADNRTRQGREQNRRVEFLVIVQ

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=102, Percent_Identity=40.1960784313725, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 21429; Mature: 21298

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLTLVLIITILLSAALGAQPWQDSDLDGVPDLKDACAATPPNTVVDANGCEKALANER
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCHHHHHHHCC
GLTPSIAITPDLCLRTNGGKRYPAVCTKLSSIAVKFEFARADVLLSQAQTLEVIARWLKS
CCCCEEEECCCEEEECCCCCCCHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHC
TGGDLLLVGHTDSVGSPAYNLQLSFERAEQVKNVLVEQFGLLASRFQVVGVGSAEPIADN
CCCCEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCC
RTRQGREQNRRVEFLVIVQ
CHHCCHHHCCEEEEEEEEC
>Mature Secondary Structure 
TKLTLVLIITILLSAALGAQPWQDSDLDGVPDLKDACAATPPNTVVDANGCEKALANER
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCHHHHHHHCC
GLTPSIAITPDLCLRTNGGKRYPAVCTKLSSIAVKFEFARADVLLSQAQTLEVIARWLKS
CCCCEEEECCCEEEECCCCCCCHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHC
TGGDLLLVGHTDSVGSPAYNLQLSFERAEQVKNVLVEQFGLLASRFQVVGVGSAEPIADN
CCCCEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCC
RTRQGREQNRRVEFLVIVQ
CHHCCHHHCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]