Click here to switch to the map view.

The map label for this gene is nahR [H]

Identifier: 167623097

GI number: 167623097

Start: 1415621

End: 1416505

Strand: Direct

Name: nahR [H]

Synonym: Shal_1163

Alternate gene names: 167623097

Gene position: 1415621-1416505 (Clockwise)

Preceding gene: 167623096

Following gene: 167623107

Centisome position: 27.08

GC content: 41.81

Gene sequence:

>885_bases
TTGAAAAGAAATATCTCAGATCTTAATCAAATCGGACTGTTATTAGATTTAGTTCATACTAAAAACATGAGCCGTACCGC
GCAGCGCTTAGGTAAAACGACTAGTGCCATATCGAAAAACCTGCAGAGATTGCGTGAGGAGCTCTGCGATCCACTTTTTA
TCAGGCAGTTGTCGGGGCTAGAGCCGACAACCTATACATTAACGCTCGCAGCAAAGCTGAGTAAAATTCAAAAAGATATC
GATGCTGCATTTGACTCTGAACTATTTGCTCCTAAGTTATATCGAGGCAAAATCACTCTGGCTGCGAACGTTGCATTGCT
GCATTATTATCAGCCCAAGCTATTGATAACCTTGTTAGAACAAGCTCCACTCGCCAATTTTGAGATCGTGCAATGGCAAG
AAGATAGTTACCAGAAAATACTCGATGGCAGTATTAATGCGGGCTTGCATTTTCTTAATGAAAATTGCACACAATCGATT
ACGCAGTATGTAGTCCAACGACATGAGATAATGTTGATGACTGGTGCCAAACACAGTGCGATAACCGCGAGTGAGGCTTT
GCTATCTCCATTAGCAATTCTTAAGATCCATGGCTGGAATACTGACGCCGTGCGTTTTTCTCGATATCTATATCAAAGAG
AGGTTGAACATAGTGTTCGCTTGCAGTGTGAAGACCTAGGCAGTTTATTCGCTTGCCTAGAATATAGTGACAGTGTCTCT
CCTTTACCGAGTTTTCTCAGCTATAAAAACTTAAAAGCGCTTCCCTTAGACGAGCGAGGCAATGAGATAAGCTCTGTAGT
ATGTATTCCTTCTACACATAGAAACGAGCCATTGTACCAATGGCTCGTTGCACTCATAAAGTCACTAAAAGTAGCTAGTG
CTTAA

Upstream 100 bases:

>100_bases
CTGTTAAGAACTGTTGTAATTGATGCTAACGATATTGAACTAAGGAGGGTCGCTAAGAGTCTATTTATTCTTTTTGACTC
GTTTAAAAAGTGGGTGGCCA

Downstream 100 bases:

>100_bases
TGAGTCTGTTAGCTAGGATAGCCGCTGCTATCGCGACAAAAATCACTGAGAAATAGATCATAACCCCTCCGAAGGTTTGG
CACTTGTAGATGTAGATGCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKRNISDLNQIGLLLDLVHTKNMSRTAQRLGKTTSAISKNLQRLREELCDPLFIRQLSGLEPTTYTLTLAAKLSKIQKDI
DAAFDSELFAPKLYRGKITLAANVALLHYYQPKLLITLLEQAPLANFEIVQWQEDSYQKILDGSINAGLHFLNENCTQSI
TQYVVQRHEIMLMTGAKHSAITASEALLSPLAILKIHGWNTDAVRFSRYLYQREVEHSVRLQCEDLGSLFACLEYSDSVS
PLPSFLSYKNLKALPLDERGNEISSVVCIPSTHRNEPLYQWLVALIKSLKVASA

Sequences:

>Translated_294_residues
MKRNISDLNQIGLLLDLVHTKNMSRTAQRLGKTTSAISKNLQRLREELCDPLFIRQLSGLEPTTYTLTLAAKLSKIQKDI
DAAFDSELFAPKLYRGKITLAANVALLHYYQPKLLITLLEQAPLANFEIVQWQEDSYQKILDGSINAGLHFLNENCTQSI
TQYVVQRHEIMLMTGAKHSAITASEALLSPLAILKIHGWNTDAVRFSRYLYQREVEHSVRLQCEDLGSLFACLEYSDSVS
PLPSFLSYKNLKALPLDERGNEISSVVCIPSTHRNEPLYQWLVALIKSLKVASA
>Mature_294_residues
MKRNISDLNQIGLLLDLVHTKNMSRTAQRLGKTTSAISKNLQRLREELCDPLFIRQLSGLEPTTYTLTLAAKLSKIQKDI
DAAFDSELFAPKLYRGKITLAANVALLHYYQPKLLITLLEQAPLANFEIVQWQEDSYQKILDGSINAGLHFLNENCTQSI
TQYVVQRHEIMLMTGAKHSAITASEALLSPLAILKIHGWNTDAVRFSRYLYQREVEHSVRLQCEDLGSLFACLEYSDSVS
PLPSFLSYKNLKALPLDERGNEISSVVCIPSTHRNEPLYQWLVALIKSLKVASA

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33146; Mature: 33146

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNISDLNQIGLLLDLVHTKNMSRTAQRLGKTTSAISKNLQRLREELCDPLFIRQLSGL
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
EPTTYTLTLAAKLSKIQKDIDAAFDSELFAPKLYRGKITLAANVALLHYYQPKLLITLLE
CCCEEEEHHHHHHHHHHHHHHHHHCCHHCCCHHHCCEEEEEEHHHHHHHHCHHHHHHHHH
QAPLANFEIVQWQEDSYQKILDGSINAGLHFLNENCTQSITQYVVQRHEIMLMTGAKHSA
HCCCCCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCH
ITASEALLSPLAILKIHGWNTDAVRFSRYLYQREVEHSVRLQCEDLGSLFACLEYSDSVS
HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLPSFLSYKNLKALPLDERGNEISSVVCIPSTHRNEPLYQWLVALIKSLKVASA
HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRNISDLNQIGLLLDLVHTKNMSRTAQRLGKTTSAISKNLQRLREELCDPLFIRQLSGL
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
EPTTYTLTLAAKLSKIQKDIDAAFDSELFAPKLYRGKITLAANVALLHYYQPKLLITLLE
CCCEEEEHHHHHHHHHHHHHHHHHCCHHCCCHHHCCEEEEEEHHHHHHHHCHHHHHHHHH
QAPLANFEIVQWQEDSYQKILDGSINAGLHFLNENCTQSITQYVVQRHEIMLMTGAKHSA
HCCCCCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCH
ITASEALLSPLAILKIHGWNTDAVRFSRYLYQREVEHSVRLQCEDLGSLFACLEYSDSVS
HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLPSFLSYKNLKALPLDERGNEISSVVCIPSTHRNEPLYQWLVALIKSLKVASA
HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]