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The map label for this gene is yebA [H]

Identifier: 167622978

GI number: 167622978

Start: 1277518

End: 1278942

Strand: Reverse

Name: yebA [H]

Synonym: Shal_1044

Alternate gene names: 167622978

Gene position: 1278942-1277518 (Counterclockwise)

Preceding gene: 167622980

Following gene: 167622977

Centisome position: 24.47

GC content: 44.77

Gene sequence:

>1425_bases
ATGGGAAAGGTTATAACTTTATTTAAATTACTGCCAAAATTACATCAAATGCTCTTGTGCGGTTTAGTTTTTGTCACGCT
AATTATTATTTTTATGCCATCTGATGATGTTCAGGCGTCTAAACAAACCCCATCGACAAGTGGCGAATATGACGTCAATA
CCCGTTATGACGTACCACTCGCTTTTAGAAAACCGACACCACCTTCAGCATCAATGAGTGAGTCAACGCCATCTCAACGA
ACGAGCAGTGAAAAGCTAGCCTTCAACACGAGTGAACAATCCAAAAAGCAGGCGCTTGTTCAAGCGACTGACAAGCCTGA
AATACAAGAACCTGCTGCACCAAAATTAAAAGAGAAACGCTTTCAAGTTAAAAGTGGCGACACCTTGGCCGCACTGTTTG
ATCGCGCAGGCTTAACCGCTAAGGATGTCTACGATGTAACTCAGCTGCCTAAAGCTAAAAAGGATCTGCTTAAAATCATG
CCGGGTGATAACCTTGTTATTGCCAAAAATGATGATGGCAAGCTGGTTCAGCTGAGATATCACCTCGACAAAATCACCAC
TTTAATCATAGACCGCACCGACAGCGGCTATAAAGAGCAGATCGTCACCAAGAAGGTAGAAGCGCGCTCTAAGTTTGCTA
GCGCGACTATTGAGAATAACTTCTGGAATGCCGGTGTTAATGCCGGACTGACACCAAATCAAATTATGCAGCTCGCCACC
ATTTTTGGCTGGGATATCGACTTTGCCTTAGATCTACGTAAGGGCGATCAGTTTGCGATGATATTTGAAGAAGAGTATGC
CAACGGCGAATTCTTAAAAAACGGCAATATTCTCGCAGCCGAATTTACCAACCAAGGTGATCGCTATACCGCCGTTCGAT
ATAAAGACGGCAACTATTATTCCGAAGAGGGCCGCAGCATGCGTAAAGCCTTCCTGCGATCACCTGTCGACTTTAAATAT
GTTAGCTCTAGCTTTAACCCGCGTAGACTACACCCGGTTACAGGCCAAGTTAAGGCCCATCGTGGCGTAGATTATGTGGC
TGCTGTTGGTACGCCTATTAAAGCGGCAGGTAACGGCCGAGTGATCAAATCAAGCTATAACCAATACAATGGTAACTATG
TGTTTATTAAGCACAACGACACTTACACCACCAAGTACCTTCACCTGACTAAACGAAAGGTGAAAACTGGGCAGTCCGTT
AAACAAGGTCAGATTATTGGTACTCTTGGCTCCACAGGCCGGGTAACGGGCCCACACCTACATTATGAGTTTATCGTTAA
CGGTGTACATCGTAATCCTCGCACCATAAAACTGCCAAAGTCAGAGCCGATTGCGAAGAAAGAAAAGGCCCAGTTTGCTA
CGCTTAGTAAAACCATGATGGCTGAGCTTGAACATAACAAACAGGTACAGATTGCAGCGCAGTAA

Upstream 100 bases:

>100_bases
AAAAAAAATATGGGCACTCATGTTACTTGTTAGCAAGCACAAATGAAAGTGTGTACACTAAAGGGATCAATAAGAAAGAG
TGAATTTGGTATCAAGGTCA

Downstream 100 bases:

>100_bases
CGCTGCGACAAGACTTTTAAACCGTCAGTCTTTAGTTTTATTCACTAGGTTTGATTTATAGGTTCGATGCGATGAATAAC
AGTTATTACGTAGGCTTGAT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MGKVITLFKLLPKLHQMLLCGLVFVTLIIIFMPSDDVQASKQTPSTSGEYDVNTRYDVPLAFRKPTPPSASMSESTPSQR
TSSEKLAFNTSEQSKKQALVQATDKPEIQEPAAPKLKEKRFQVKSGDTLAALFDRAGLTAKDVYDVTQLPKAKKDLLKIM
PGDNLVIAKNDDGKLVQLRYHLDKITTLIIDRTDSGYKEQIVTKKVEARSKFASATIENNFWNAGVNAGLTPNQIMQLAT
IFGWDIDFALDLRKGDQFAMIFEEEYANGEFLKNGNILAAEFTNQGDRYTAVRYKDGNYYSEEGRSMRKAFLRSPVDFKY
VSSSFNPRRLHPVTGQVKAHRGVDYVAAVGTPIKAAGNGRVIKSSYNQYNGNYVFIKHNDTYTTKYLHLTKRKVKTGQSV
KQGQIIGTLGSTGRVTGPHLHYEFIVNGVHRNPRTIKLPKSEPIAKKEKAQFATLSKTMMAELEHNKQVQIAAQ

Sequences:

>Translated_474_residues
MGKVITLFKLLPKLHQMLLCGLVFVTLIIIFMPSDDVQASKQTPSTSGEYDVNTRYDVPLAFRKPTPPSASMSESTPSQR
TSSEKLAFNTSEQSKKQALVQATDKPEIQEPAAPKLKEKRFQVKSGDTLAALFDRAGLTAKDVYDVTQLPKAKKDLLKIM
PGDNLVIAKNDDGKLVQLRYHLDKITTLIIDRTDSGYKEQIVTKKVEARSKFASATIENNFWNAGVNAGLTPNQIMQLAT
IFGWDIDFALDLRKGDQFAMIFEEEYANGEFLKNGNILAAEFTNQGDRYTAVRYKDGNYYSEEGRSMRKAFLRSPVDFKY
VSSSFNPRRLHPVTGQVKAHRGVDYVAAVGTPIKAAGNGRVIKSSYNQYNGNYVFIKHNDTYTTKYLHLTKRKVKTGQSV
KQGQIIGTLGSTGRVTGPHLHYEFIVNGVHRNPRTIKLPKSEPIAKKEKAQFATLSKTMMAELEHNKQVQIAAQ
>Mature_473_residues
GKVITLFKLLPKLHQMLLCGLVFVTLIIIFMPSDDVQASKQTPSTSGEYDVNTRYDVPLAFRKPTPPSASMSESTPSQRT
SSEKLAFNTSEQSKKQALVQATDKPEIQEPAAPKLKEKRFQVKSGDTLAALFDRAGLTAKDVYDVTQLPKAKKDLLKIMP
GDNLVIAKNDDGKLVQLRYHLDKITTLIIDRTDSGYKEQIVTKKVEARSKFASATIENNFWNAGVNAGLTPNQIMQLATI
FGWDIDFALDLRKGDQFAMIFEEEYANGEFLKNGNILAAEFTNQGDRYTAVRYKDGNYYSEEGRSMRKAFLRSPVDFKYV
SSSFNPRRLHPVTGQVKAHRGVDYVAAVGTPIKAAGNGRVIKSSYNQYNGNYVFIKHNDTYTTKYLHLTKRKVKTGQSVK
QGQIIGTLGSTGRVTGPHLHYEFIVNGVHRNPRTIKLPKSEPIAKKEKAQFATLSKTMMAELEHNKQVQIAAQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=365, Percent_Identity=35.0684931506849, Blast_Score=230, Evalue=2e-61,
Organism=Escherichia coli, GI87082174, Length=105, Percent_Identity=40.9523809523809, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 53011; Mature: 52880

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVITLFKLLPKLHQMLLCGLVFVTLIIIFMPSDDVQASKQTPSTSGEYDVNTRYDVPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCEECCEE
AFRKPTPPSASMSESTPSQRTSSEKLAFNTSEQSKKQALVQATDKPEIQEPAAPKLKEKR
EECCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
FQVKSGDTLAALFDRAGLTAKDVYDVTQLPKAKKDLLKIMPGDNLVIAKNDDGKLVQLRY
EEECCCCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCCCCEEEEEE
HLDKITTLIIDRTDSGYKEQIVTKKVEARSKFASATIENNFWNAGVNAGLTPNQIMQLAT
HHCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHH
IFGWDIDFALDLRKGDQFAMIFEEEYANGEFLKNGNILAAEFTNQGDRYTAVRYKDGNYY
HHCCCEEEEEEECCCCEEEEEEEECCCCCCEEECCCEEEEEECCCCCEEEEEEEECCCEE
SEEGRSMRKAFLRSPVDFKYVSSSFNPRRLHPVTGQVKAHRGVDYVAAVGTPIKAAGNGR
HHHHHHHHHHHHCCCCCEEECCCCCCCCEECCCCCCEECCCCCEEEEECCCCEEECCCCC
VIKSSYNQYNGNYVFIKHNDTYTTKYLHLTKRKVKTGQSVKQGQIIGTLGSTGRVTGPHL
EEECCCCCCCCCEEEEEECCCEEEEEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCE
HYEFIVNGVHRNPRTIKLPKSEPIAKKEKAQFATLSKTMMAELEHNKQVQIAAQ
EEEEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
>Mature Secondary Structure 
GKVITLFKLLPKLHQMLLCGLVFVTLIIIFMPSDDVQASKQTPSTSGEYDVNTRYDVPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCEECCEE
AFRKPTPPSASMSESTPSQRTSSEKLAFNTSEQSKKQALVQATDKPEIQEPAAPKLKEKR
EECCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
FQVKSGDTLAALFDRAGLTAKDVYDVTQLPKAKKDLLKIMPGDNLVIAKNDDGKLVQLRY
EEECCCCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCCCCEEEEEE
HLDKITTLIIDRTDSGYKEQIVTKKVEARSKFASATIENNFWNAGVNAGLTPNQIMQLAT
HHCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHH
IFGWDIDFALDLRKGDQFAMIFEEEYANGEFLKNGNILAAEFTNQGDRYTAVRYKDGNYY
HHCCCEEEEEEECCCCEEEEEEEECCCCCCEEECCCEEEEEECCCCCEEEEEEEECCCEE
SEEGRSMRKAFLRSPVDFKYVSSSFNPRRLHPVTGQVKAHRGVDYVAAVGTPIKAAGNGR
HHHHHHHHHHHHCCCCCEEECCCCCCCCEECCCCCCEECCCCCEEEEECCCCEEECCCCC
VIKSSYNQYNGNYVFIKHNDTYTTKYLHLTKRKVKTGQSVKQGQIIGTLGSTGRVTGPHL
EEECCCCCCCCCEEEEEECCCEEEEEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCE
HYEFIVNGVHRNPRTIKLPKSEPIAKKEKAQFATLSKTMMAELEHNKQVQIAAQ
EEEEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]