| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622883
Identifier: 167622883
GI number: 167622883
Start: 1160408
End: 1161940
Strand: Reverse
Name: 167622883
Synonym: Shal_0943
Alternate gene names: NA
Gene position: 1161940-1160408 (Counterclockwise)
Preceding gene: 167622884
Following gene: 167622879
Centisome position: 22.23
GC content: 45.53
Gene sequence:
>1533_bases ATGAGCGATTCGAACGATGCTTATGCAGATAACGACCTAAGGGAAGTTAAGCAGCTAGGTATGTGGGCTTCTATTGCCAG CTTAAGTTACATTTTCTGGATTGTCGGTGGCATGGAGCTGGTTGAGCGAATTGCCTATTACGGCGTCAAGGCCAGTGCAG GCTTATATGCAAAGGCTCCCGTCTCTGAAGGCGGTTTGGGCATTAGCCTAAGCGATTACGGTATTATTATTGCCATCTGG GCATTTATGCAGACCTTTATCCCTGTTTTTACTGGCGGGATCTCGGACCGAGTTGGCTATAAAGAGACTATTTTCGCCTC GACTATTATCAAGATTGCAGGCTACCTAGTGATGGCCTTCTTCCCCAGCTTTTATGGTTTCCTTTTTGGTGCCATATTAC TTGCGGGCGGTACCGGTATATTTAAGCCCGGGATCCAAGGTACATTAGTCCTTTCTACAGGTCGACAAAACACCTCGATG GCGTGGGGAATATTCTACCAAGTCGTCAATATCGGTGGTTTCTTAGGACCACTCGTTGCCGTACATATGCGCCAGCTATC ATGGGATAATGTATTTTATGCCTGTGCCGCAATTATCTCGCTTAACTTCCTATTCTTACTCGCCTATAAAGAGCCAGGTA AAGAAGAGCGTATGGAGAGAAACCGTAAGATTAAAGCCGGAGAGATCCACCAAGAAGCACTCTGGCGTGATGCCTTACAC GAACTCAAAAAGCCTATCGTTATCTACTATATGTTAGTTTTTGCGGGTTTTTGGTTCCTGTTCAACTCGCTATTTGATGT GTTACCAATCCATATTTCTGAGTGGGTCGATACCAGTGTGATTGTGACGTCACTATTTGGACCAGACGGTACCTCTAATG GCTTCTTCCAATTCTGGCTTGGACTCGATAATACCGGTACTAAGGTGATGCCTGAGGGCATGCTAAACCTGAACGCGGGT ATGATCATGACAACCTGTTTCTTGGTTGCCGCATTAACCGCTAAATATCGTATCACGACAGCCATGCTAGCCGGCTGCTT GTTGAGTATTTTGGCGTTCGTATTGATTGGTGCGACAAACGCGGCATGGATGATTGTTCTTGCGATTGCGATGTTCTCAT TCGGTGAGATGATGATCAGCCCAAAGAAAAATGAGTTTATGGGTAATATCGCACCAGAAGGTAAAAAAGCCATGTACTTG GGCTTTGTAATGTTACCGCAGGGTATCGGTTGGACGCTTGAAGGTTACTTTGGCCCTAAACTGTACGAGATGTATGCATC AAAAGAAGTTTTTTCTCGCGAACTATTGGCCGAACGCGGAATGAGCGCAGCAGATATCAGTGCGATTCCACAAGGCGAAG CCTTTACAACTTTGGTTGCCTATACTGGTGAGAGTGCACAAGCACTGACAACGCTTTTATATAACACCCATGACATAGGT ATGGCTTGGTATATTATCGCCGCAATCGGTAGCATCTCAGCAATTGGTATTTACCTTTATGGTAAGTGGTTGTTTAAGCT TCAGCAGCGTTAA
Upstream 100 bases:
>100_bases GTTTTGGTAAAGAATGACACGGTCAATAAACCCAAAACCAACACAATAAAAAAAACATACAAAATAAATATAAATAATTA AAACATTTGAAGGGATAGTT
Downstream 100 bases:
>100_bases ACCAGCACTGAGTCTTAGTGTGAAAGAGTAAAAATCAGATACAAAAAAAGCTGACCTAGGTCAGCTTTTTTTACGTCAAT TGCTTATATCAAGCAATCAG
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Permease
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MSDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAPVSEGGLGISLSDYGIIIAIW AFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAFFPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSM AWGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALH ELKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWLGLDNTGTKVMPEGMLNLNAG MIMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATNAAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYL GFVMLPQGIGWTLEGYFGPKLYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIG MAWYIIAAIGSISAIGIYLYGKWLFKLQQR
Sequences:
>Translated_510_residues MSDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAPVSEGGLGISLSDYGIIIAIW AFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAFFPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSM AWGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALH ELKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWLGLDNTGTKVMPEGMLNLNAG MIMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATNAAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYL GFVMLPQGIGWTLEGYFGPKLYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIG MAWYIIAAIGSISAIGIYLYGKWLFKLQQR >Mature_509_residues SDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAPVSEGGLGISLSDYGIIIAIWA FMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAFFPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSMA WGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALHE LKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWLGLDNTGTKVMPEGMLNLNAGM IMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATNAAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYLG FVMLPQGIGWTLEGYFGPKLYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIGM AWYIIAAIGSISAIGIYLYGKWLFKLQQR
Specific function: Unknown
COG id: COG3104
COG function: function code E; Dipeptide/tripeptide permease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56214; Mature: 56082
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC VSEGGLGISLSDYGIIIAIWAFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAF CCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSMAWGIFYQVVNIGGFLGPLVA HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH VHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALH HHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH ELKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCCCCCCEEEEEE GLDNTGTKVMPEGMLNLNAGMIMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATN ECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWTLEGYFGPK HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCEEECCCCHH LYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIG HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHEEEEEECCCHHHHHHHHHHCCCCHH MAWYIIAAIGSISAIGIYLYGKWLFKLQQR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC VSEGGLGISLSDYGIIIAIWAFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAF CCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSMAWGIFYQVVNIGGFLGPLVA HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH VHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALH HHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH ELKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCCCCCCEEEEEE GLDNTGTKVMPEGMLNLNAGMIMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATN ECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWTLEGYFGPK HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCEEECCCCHH LYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIG HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHEEEEEECCCHHHHHHHHHHCCCCHH MAWYIIAAIGSISAIGIYLYGKWLFKLQQR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA