Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

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The map label for this gene is 167622883

Identifier: 167622883

GI number: 167622883

Start: 1160408

End: 1161940

Strand: Reverse

Name: 167622883

Synonym: Shal_0943

Alternate gene names: NA

Gene position: 1161940-1160408 (Counterclockwise)

Preceding gene: 167622884

Following gene: 167622879

Centisome position: 22.23

GC content: 45.53

Gene sequence:

>1533_bases
ATGAGCGATTCGAACGATGCTTATGCAGATAACGACCTAAGGGAAGTTAAGCAGCTAGGTATGTGGGCTTCTATTGCCAG
CTTAAGTTACATTTTCTGGATTGTCGGTGGCATGGAGCTGGTTGAGCGAATTGCCTATTACGGCGTCAAGGCCAGTGCAG
GCTTATATGCAAAGGCTCCCGTCTCTGAAGGCGGTTTGGGCATTAGCCTAAGCGATTACGGTATTATTATTGCCATCTGG
GCATTTATGCAGACCTTTATCCCTGTTTTTACTGGCGGGATCTCGGACCGAGTTGGCTATAAAGAGACTATTTTCGCCTC
GACTATTATCAAGATTGCAGGCTACCTAGTGATGGCCTTCTTCCCCAGCTTTTATGGTTTCCTTTTTGGTGCCATATTAC
TTGCGGGCGGTACCGGTATATTTAAGCCCGGGATCCAAGGTACATTAGTCCTTTCTACAGGTCGACAAAACACCTCGATG
GCGTGGGGAATATTCTACCAAGTCGTCAATATCGGTGGTTTCTTAGGACCACTCGTTGCCGTACATATGCGCCAGCTATC
ATGGGATAATGTATTTTATGCCTGTGCCGCAATTATCTCGCTTAACTTCCTATTCTTACTCGCCTATAAAGAGCCAGGTA
AAGAAGAGCGTATGGAGAGAAACCGTAAGATTAAAGCCGGAGAGATCCACCAAGAAGCACTCTGGCGTGATGCCTTACAC
GAACTCAAAAAGCCTATCGTTATCTACTATATGTTAGTTTTTGCGGGTTTTTGGTTCCTGTTCAACTCGCTATTTGATGT
GTTACCAATCCATATTTCTGAGTGGGTCGATACCAGTGTGATTGTGACGTCACTATTTGGACCAGACGGTACCTCTAATG
GCTTCTTCCAATTCTGGCTTGGACTCGATAATACCGGTACTAAGGTGATGCCTGAGGGCATGCTAAACCTGAACGCGGGT
ATGATCATGACAACCTGTTTCTTGGTTGCCGCATTAACCGCTAAATATCGTATCACGACAGCCATGCTAGCCGGCTGCTT
GTTGAGTATTTTGGCGTTCGTATTGATTGGTGCGACAAACGCGGCATGGATGATTGTTCTTGCGATTGCGATGTTCTCAT
TCGGTGAGATGATGATCAGCCCAAAGAAAAATGAGTTTATGGGTAATATCGCACCAGAAGGTAAAAAAGCCATGTACTTG
GGCTTTGTAATGTTACCGCAGGGTATCGGTTGGACGCTTGAAGGTTACTTTGGCCCTAAACTGTACGAGATGTATGCATC
AAAAGAAGTTTTTTCTCGCGAACTATTGGCCGAACGCGGAATGAGCGCAGCAGATATCAGTGCGATTCCACAAGGCGAAG
CCTTTACAACTTTGGTTGCCTATACTGGTGAGAGTGCACAAGCACTGACAACGCTTTTATATAACACCCATGACATAGGT
ATGGCTTGGTATATTATCGCCGCAATCGGTAGCATCTCAGCAATTGGTATTTACCTTTATGGTAAGTGGTTGTTTAAGCT
TCAGCAGCGTTAA

Upstream 100 bases:

>100_bases
GTTTTGGTAAAGAATGACACGGTCAATAAACCCAAAACCAACACAATAAAAAAAACATACAAAATAAATATAAATAATTA
AAACATTTGAAGGGATAGTT

Downstream 100 bases:

>100_bases
ACCAGCACTGAGTCTTAGTGTGAAAGAGTAAAAATCAGATACAAAAAAAGCTGACCTAGGTCAGCTTTTTTTACGTCAAT
TGCTTATATCAAGCAATCAG

Product: major facilitator transporter

Products: NA

Alternate protein names: Facilitator Superfamily Permease

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MSDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAPVSEGGLGISLSDYGIIIAIW
AFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAFFPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSM
AWGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALH
ELKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWLGLDNTGTKVMPEGMLNLNAG
MIMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATNAAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYL
GFVMLPQGIGWTLEGYFGPKLYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIG
MAWYIIAAIGSISAIGIYLYGKWLFKLQQR

Sequences:

>Translated_510_residues
MSDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAPVSEGGLGISLSDYGIIIAIW
AFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAFFPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSM
AWGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALH
ELKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWLGLDNTGTKVMPEGMLNLNAG
MIMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATNAAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYL
GFVMLPQGIGWTLEGYFGPKLYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIG
MAWYIIAAIGSISAIGIYLYGKWLFKLQQR
>Mature_509_residues
SDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAPVSEGGLGISLSDYGIIIAIWA
FMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAFFPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSMA
WGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALHE
LKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWLGLDNTGTKVMPEGMLNLNAGM
IMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATNAAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYLG
FVMLPQGIGWTLEGYFGPKLYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIGM
AWYIIAAIGSISAIGIYLYGKWLFKLQQR

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56214; Mature: 56082

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC
VSEGGLGISLSDYGIIIAIWAFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAF
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSMAWGIFYQVVNIGGFLGPLVA
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
VHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALH
HHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
ELKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCCCCCCEEEEEE
GLDNTGTKVMPEGMLNLNAGMIMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATN
ECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWTLEGYFGPK
HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCEEECCCCHH
LYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIG
HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHEEEEEECCCHHHHHHHHHHCCCCHH
MAWYIIAAIGSISAIGIYLYGKWLFKLQQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC
VSEGGLGISLSDYGIIIAIWAFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAF
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSMAWGIFYQVVNIGGFLGPLVA
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
VHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALH
HHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
ELKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCCCCCCEEEEEE
GLDNTGTKVMPEGMLNLNAGMIMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATN
ECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWTLEGYFGPK
HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCEEECCCCHH
LYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIG
HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHEEEEEECCCHHHHHHHHHHCCCCHH
MAWYIIAAIGSISAIGIYLYGKWLFKLQQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA