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The map label for this gene is glxA [H]

Identifier: 167622808

GI number: 167622808

Start: 1084262

End: 1085299

Strand: Reverse

Name: glxA [H]

Synonym: Shal_0868

Alternate gene names: 167622808

Gene position: 1085299-1084262 (Counterclockwise)

Preceding gene: 167622810

Following gene: 167622807

Centisome position: 20.76

GC content: 48.36

Gene sequence:

>1038_bases
ATGTCGAATTTAAATAGTAAGAATGCGGTGTCCAACAGCCCAATTAACGCCCCCGATGTACGCTTTCTTCTACTGCCCTT
ACCAGAATTTAGTATGCTGCCTTTCGGCGGTTTCCTCGATAAATTGCGTTTTTCTGCCGATGAGGAAGACTACAGTCAGC
AGCAATATTGCGCTTGGCAGATTGTCGGGTTAGAACCTTGTCACCTCTTATCCAGTAGTGGGGTCTCAGTTGAGATCAAA
ACCACTATTGAGGACATTGAGTTAGCCGATTATGACTACTTGGTGGTATTTGGCGGCCGCAGCGCTCGAAGCTGCCAGCA
GTTACCCAAACAATATCAAGATCTATTGCGCTTAGCGGCGGCTAAGGGAGTGACACTGGTCAGCATTGATAATGCCTGTT
TTCTTTTTGCCGCAGCGGGCCTGCTTAATAACCACAGCGTAGCGGTTCACTGGCGTCACGTACAAGAGTTTCGAACCGCT
TTTCCTCGCATCGATATTGGCACCGAACAGCTCTTTTGCATCGATGGAAAACGGATCAGCTGTGCCGGTGGCAGTGCTGC
CATCGATCTGGCCGTAGAGCTATTAGCACGTCACTGCGGCCGCATAAAAGCTCTGAAGGGACTGGCGGATATGCTTGTGG
ATGAGGCAAGAGAACAGCGCCACCAACTCAAGTCTCTGGATGCCAATATTCAAATAAATAATACGGCTAGACGCCATGTT
GGCCGCGCCATTAGTCTGATGCGCCAGTTGTTAGCAAGCTCTGAAACGGTCGATGAACTTGCAAATAGGTTGGCAATAAG
TCGACGTCAGCTCGATAGGCAGTTTAAAGATTGTTATGGGCAGACAGCGCGTGAGTACTGGGCCGAAATGCGACTACAAC
ATGTGTATTGGCGAGTGGTTAATTCTGATCATAGTTTGCAGTACTTGGCAGATGAAGTTGGCATTCAAGATGTGAGCTAT
CTGTGCAAGGTGTTTCGAAAGCGGTTCGGCAATAGCCCGAATTCATTACGCAAACCTATTGCCTTAGCAATAGATTAG

Upstream 100 bases:

>100_bases
TCTATATAAAAAACGGATTATAGGGGAAGGTAAGAATCGCCACTTGATACAATCAAGACAAAATAAGGTAATATTTAGAC
ATTATTTTGTGAGAAATCAT

Downstream 100 bases:

>100_bases
CAGACACGTTAAAGATCGTGAGCGTCCAGCCACAGCAATCCCCGTTTTTTCAAAGCTAATACGCAATCAGATTTCACTCA
TCACCAACTTTACACTTGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MSNLNSKNAVSNSPINAPDVRFLLLPLPEFSMLPFGGFLDKLRFSADEEDYSQQQYCAWQIVGLEPCHLLSSSGVSVEIK
TTIEDIELADYDYLVVFGGRSARSCQQLPKQYQDLLRLAAAKGVTLVSIDNACFLFAAAGLLNNHSVAVHWRHVQEFRTA
FPRIDIGTEQLFCIDGKRISCAGGSAAIDLAVELLARHCGRIKALKGLADMLVDEAREQRHQLKSLDANIQINNTARRHV
GRAISLMRQLLASSETVDELANRLAISRRQLDRQFKDCYGQTAREYWAEMRLQHVYWRVVNSDHSLQYLADEVGIQDVSY
LCKVFRKRFGNSPNSLRKPIALAID

Sequences:

>Translated_345_residues
MSNLNSKNAVSNSPINAPDVRFLLLPLPEFSMLPFGGFLDKLRFSADEEDYSQQQYCAWQIVGLEPCHLLSSSGVSVEIK
TTIEDIELADYDYLVVFGGRSARSCQQLPKQYQDLLRLAAAKGVTLVSIDNACFLFAAAGLLNNHSVAVHWRHVQEFRTA
FPRIDIGTEQLFCIDGKRISCAGGSAAIDLAVELLARHCGRIKALKGLADMLVDEAREQRHQLKSLDANIQINNTARRHV
GRAISLMRQLLASSETVDELANRLAISRRQLDRQFKDCYGQTAREYWAEMRLQHVYWRVVNSDHSLQYLADEVGIQDVSY
LCKVFRKRFGNSPNSLRKPIALAID
>Mature_344_residues
SNLNSKNAVSNSPINAPDVRFLLLPLPEFSMLPFGGFLDKLRFSADEEDYSQQQYCAWQIVGLEPCHLLSSSGVSVEIKT
TIEDIELADYDYLVVFGGRSARSCQQLPKQYQDLLRLAAAKGVTLVSIDNACFLFAAAGLLNNHSVAVHWRHVQEFRTAF
PRIDIGTEQLFCIDGKRISCAGGSAAIDLAVELLARHCGRIKALKGLADMLVDEAREQRHQLKSLDANIQINNTARRHVG
RAISLMRQLLASSETVDELANRLAISRRQLDRQFKDCYGQTAREYWAEMRLQHVYWRVVNSDHSLQYLADEVGIQDVSYL
CKVFRKRFGNSPNSLRKPIALAID

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38817; Mature: 38686

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLNSKNAVSNSPINAPDVRFLLLPLPEFSMLPFGGFLDKLRFSADEEDYSQQQYCAWQ
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHCEEEE
IVGLEPCHLLSSSGVSVEIKTTIEDIELADYDYLVVFGGRSARSCQQLPKQYQDLLRLAA
EECCCHHHHHCCCCCEEEEEECHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
AKGVTLVSIDNACFLFAAAGLLNNHSVAVHWRHVQEFRTAFPRIDIGTEQLFCIDGKRIS
HCCEEEEEECCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCCCCEEEEECCCEEE
CAGGSAAIDLAVELLARHCGRIKALKGLADMLVDEAREQRHQLKSLDANIQINNTARRHV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHH
GRAISLMRQLLASSETVDELANRLAISRRQLDRQFKDCYGQTAREYWAEMRLQHVYWRVV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSDHSLQYLADEVGIQDVSYLCKVFRKRFGNSPNSLRKPIALAID
CCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHCCEEEECC
>Mature Secondary Structure 
SNLNSKNAVSNSPINAPDVRFLLLPLPEFSMLPFGGFLDKLRFSADEEDYSQQQYCAWQ
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHCEEEE
IVGLEPCHLLSSSGVSVEIKTTIEDIELADYDYLVVFGGRSARSCQQLPKQYQDLLRLAA
EECCCHHHHHCCCCCEEEEEECHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
AKGVTLVSIDNACFLFAAAGLLNNHSVAVHWRHVQEFRTAFPRIDIGTEQLFCIDGKRIS
HCCEEEEEECCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCCCCEEEEECCCEEE
CAGGSAAIDLAVELLARHCGRIKALKGLADMLVDEAREQRHQLKSLDANIQINNTARRHV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHH
GRAISLMRQLLASSETVDELANRLAISRRQLDRQFKDCYGQTAREYWAEMRLQHVYWRVV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSDHSLQYLADEVGIQDVSYLCKVFRKRFGNSPNSLRKPIALAID
CCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]