BacMap

Definition	Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession	NC_010334
Length	5,226,917

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The map label for this gene is srmB [H]

Identifier: 167622797

GI number: 167622797

Start: 1068113

End: 1069348

Strand: Reverse

Name: srmB [H]

Synonym: Shal_0857

Alternate gene names: 167622797

Gene position: 1069348-1068113 (Counterclockwise)

Preceding gene: 167622798

Following gene: 167622795

Centisome position: 20.46

GC content: 48.22

Gene sequence:

>1236_bases
ATGCCACGCATGCAATTTGAAGATCTCCAGCTTGACCCTCGTTTGTTAGAGTCACTGAAAGCAATGGGTCATAACAAGCC
CACTACGATACAACAACAAACAATCCCAGTTGCTATGGAGCAAAGAGATATCTTAGCTCGCGCGCCAACGGGTACAGGCA
AGACTGCAAGCTTCCTTCTGCCTGCGTTGCAACACCTTCTCGACTTTCCACGTCGATATGGCGGCCGCGCGCGCGTGTTG
ATCCTGACACCTACTCGCGAACTTGCTAGCCAAATTCATCGTTATGCCAGCCACCTTGCTACAGGCCTAGGTTTAGACAC
GGTTATCATCACAGGTGGTGTCCCTTACGGTCCTCAAGAAGAAGCACTACAGAAGAACGTTGATATCTTAGTCGCCACTC
CTGGTCGTTTAATGGAGTACCTAGACAAGGGGCACTTCAACGCTGAAGAGGTCGAAGTTCTGATCATCGATGAAGCTGAC
CGCATGCTGGATATGGGCTTCTCGGCAGTCGTTGAAACCATTGCTATCGAATCCGTTGGCCGTAAGCAAACCATGCTGTT
TTCTGCCACGCTTGAAGGCAGCGATGTTGGTCGTTTCTCGCATGAGCTACTCACCAACCCAGTTAAGCTTGAAGCGGAAG
CACCACGTAGCGAAAAAGCCAAAATTCATCAGTGGATCCACCTAGCCGATGATAAAGCGCATAAATTTGCACTGTTGTGC
GCACTGTTAAAACAAGAAGAGGTGCAGCGCACCATTGTCTTCGTTAAGACACGTGAAGCAGTAGCGAGTCTTGAAGGCTT
GCTACAAAAAGAAGGGATCACTTGTGCCTTTATGCGCGGTGATATGGAGCAAAAAGCGCGTTTCCAAGCACTAGGTCGTT
TCACCAAAGGTGAAGTGAATATCTTGCTAGCAACAGACGTTGCCGCACGCGGTATCGATATTGACGATATTACCCATGTT
ATCAACTTCGATATGCCACGCTCTGCAGATACTTACGTTCACCGTATCGGTCGTACTGGCCGCGCTGGCGCTAAAGGTAC
TGCTATTTCGCTAGTTGAAGCCCATGATATTCGTGTTGTTGGTAAGATTGAGCGCTATATTGAGCAGCCACTGAAGCGAC
GTTTCGTTAAAGATTTGCGTCCGAAGAATAAAGAAGCTAAACCACCAGGAAAGAAGAAGCCGGGTCCAGAAGGCAAAAAC
TTCAGCAAGAAGAACAAGAAGAAAAAGAAGAAATAA

Upstream 100 bases:

>100_bases
GCTGAGTCAGGATTTTTATTTAAAGCTTTAAGGATCTGGCGATCTAATCGTTTAAAGTCGCTTCTATAAGCATTATAATA
TCCGGCTATTATTTATTGAG

Downstream 100 bases:

>100_bases
ATACAAGCCTTCTTTTTCGACATTAACATTAAAAGGCCACGTTTACGTGGCCTTTTTTATCGCCATTACGCAGGTATATG
CACACCCAAACTACGCAACA

Product: ATP-dependent RNA helicase SrmB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MPRMQFEDLQLDPRLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPALQHLLDFPRRYGGRARVL
ILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGPQEEALQKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEAD
RMLDMGFSAVVETIAIESVGRKQTMLFSATLEGSDVGRFSHELLTNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLC
ALLKQEEVQRTIVFVKTREAVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVNILLATDVAARGIDIDDITHV
INFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGKIERYIEQPLKRRFVKDLRPKNKEAKPPGKKKPGPEGKN
FSKKNKKKKKK

Sequences:

>Translated_411_residues
MPRMQFEDLQLDPRLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPALQHLLDFPRRYGGRARVL
ILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGPQEEALQKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEAD
RMLDMGFSAVVETIAIESVGRKQTMLFSATLEGSDVGRFSHELLTNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLC
ALLKQEEVQRTIVFVKTREAVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVNILLATDVAARGIDIDDITHV
INFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGKIERYIEQPLKRRFVKDLRPKNKEAKPPGKKKPGPEGKN
FSKKNKKKKKK
>Mature_410_residues
PRMQFEDLQLDPRLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPALQHLLDFPRRYGGRARVLI
LTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGPQEEALQKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADR
MLDMGFSAVVETIAIESVGRKQTMLFSATLEGSDVGRFSHELLTNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLCA
LLKQEEVQRTIVFVKTREAVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVNILLATDVAARGIDIDDITHVI
NFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGKIERYIEQPLKRRFVKDLRPKNKEAKPPGKKKPGPEGKNF
SKKNKKKKKK

Specific function: RNA-dependent ATPase activity. Probably interacts with 23S ribosomal RNA [H]

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI224593278, Length=378, Percent_Identity=38.8888888888889, Blast_Score=246, Evalue=4e-65,
Organism=Homo sapiens, GI45446747, Length=369, Percent_Identity=35.7723577235772, Blast_Score=235, Evalue=7e-62,
Organism=Homo sapiens, GI45446743, Length=369, Percent_Identity=35.7723577235772, Blast_Score=235, Evalue=7e-62,
Organism=Homo sapiens, GI222352149, Length=378, Percent_Identity=38.6243386243386, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI301171467, Length=377, Percent_Identity=36.8700265251989, Blast_Score=233, Evalue=3e-61,
Organism=Homo sapiens, GI301171475, Length=377, Percent_Identity=36.8700265251989, Blast_Score=232, Evalue=4e-61,
Organism=Homo sapiens, GI87196351, Length=377, Percent_Identity=36.8700265251989, Blast_Score=232, Evalue=4e-61,
Organism=Homo sapiens, GI20149629, Length=367, Percent_Identity=37.3297002724796, Blast_Score=230, Evalue=1e-60,
Organism=Homo sapiens, GI4758138, Length=366, Percent_Identity=35.2459016393443, Blast_Score=228, Evalue=7e-60,
Organism=Homo sapiens, GI262118318, Length=377, Percent_Identity=36.0742705570292, Blast_Score=227, Evalue=1e-59,
Organism=Homo sapiens, GI216548263, Length=377, Percent_Identity=36.0742705570292, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI262231852, Length=377, Percent_Identity=36.0742705570292, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI13518015, Length=377, Percent_Identity=36.0742705570292, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI169881239, Length=374, Percent_Identity=36.096256684492, Blast_Score=225, Evalue=5e-59,
Organism=Homo sapiens, GI13514809, Length=374, Percent_Identity=36.096256684492, Blast_Score=225, Evalue=5e-59,
Organism=Homo sapiens, GI148613856, Length=374, Percent_Identity=34.2245989304813, Blast_Score=225, Evalue=5e-59,
Organism=Homo sapiens, GI38201710, Length=374, Percent_Identity=34.2245989304813, Blast_Score=225, Evalue=5e-59,
Organism=Homo sapiens, GI31542656, Length=382, Percent_Identity=39.2670157068063, Blast_Score=225, Evalue=6e-59,
Organism=Homo sapiens, GI51094101, Length=356, Percent_Identity=38.2022471910112, Blast_Score=217, Evalue=2e-56,
Organism=Homo sapiens, GI164419743, Length=356, Percent_Identity=38.2022471910112, Blast_Score=217, Evalue=2e-56,
Organism=Homo sapiens, GI188035877, Length=371, Percent_Identity=37.1967654986523, Blast_Score=217, Evalue=2e-56,
Organism=Homo sapiens, GI41327771, Length=402, Percent_Identity=33.5820895522388, Blast_Score=210, Evalue=2e-54,
Organism=Homo sapiens, GI55749865, Length=377, Percent_Identity=33.6870026525199, Blast_Score=206, Evalue=2e-53,
Organism=Homo sapiens, GI164664518, Length=394, Percent_Identity=31.4720812182741, Blast_Score=205, Evalue=7e-53,
Organism=Homo sapiens, GI41327773, Length=398, Percent_Identity=33.4170854271357, Blast_Score=205, Evalue=8e-53,
Organism=Homo sapiens, GI7661920, Length=361, Percent_Identity=32.409972299169, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI21071032, Length=363, Percent_Identity=34.1597796143251, Blast_Score=202, Evalue=4e-52,
Organism=Homo sapiens, GI41327776, Length=367, Percent_Identity=34.3324250681199, Blast_Score=201, Evalue=1e-51,
Organism=Homo sapiens, GI13514831, Length=353, Percent_Identity=34.2776203966006, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI6005743, Length=387, Percent_Identity=31.0077519379845, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI8922886, Length=387, Percent_Identity=31.266149870801, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI38569505, Length=373, Percent_Identity=34.0482573726542, Blast_Score=188, Evalue=1e-47,
Organism=Homo sapiens, GI38569503, Length=373, Percent_Identity=34.0482573726542, Blast_Score=188, Evalue=1e-47,
Organism=Homo sapiens, GI4503529, Length=363, Percent_Identity=33.0578512396694, Blast_Score=184, Evalue=2e-46,
Organism=Homo sapiens, GI9506931, Length=401, Percent_Identity=31.1720698254364, Blast_Score=179, Evalue=3e-45,
Organism=Homo sapiens, GI83700235, Length=364, Percent_Identity=32.4175824175824, Blast_Score=179, Evalue=6e-45,
Organism=Homo sapiens, GI21040371, Length=373, Percent_Identity=30.8310991957105, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI62241022, Length=371, Percent_Identity=30.188679245283, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI4758112, Length=371, Percent_Identity=30.188679245283, Blast_Score=172, Evalue=5e-43,
Organism=Homo sapiens, GI18375623, Length=371, Percent_Identity=30.188679245283, Blast_Score=172, Evalue=5e-43,
Organism=Homo sapiens, GI50659095, Length=362, Percent_Identity=33.4254143646409, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI38327634, Length=362, Percent_Identity=32.5966850828729, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI41327779, Length=399, Percent_Identity=33.3333333333333, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI164419732, Length=380, Percent_Identity=29.2105263157895, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI62241024, Length=349, Percent_Identity=30.0859598853868, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI13129006, Length=385, Percent_Identity=30.6493506493506, Blast_Score=158, Evalue=1e-38,
Organism=Homo sapiens, GI17505907, Length=420, Percent_Identity=29.5238095238095, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI256223453, Length=356, Percent_Identity=29.2134831460674, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI9966805, Length=325, Percent_Identity=32, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI256773275, Length=428, Percent_Identity=32.4766355140187, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI4826686, Length=333, Percent_Identity=31.2312312312312, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI154759257, Length=414, Percent_Identity=29.4685990338164, Blast_Score=135, Evalue=6e-32,
Organism=Homo sapiens, GI20336298, Length=359, Percent_Identity=28.6908077994429, Blast_Score=106, Evalue=4e-23,
Organism=Escherichia coli, GI1788930, Length=382, Percent_Identity=55.2356020942408, Blast_Score=405, Evalue=1e-114,
Organism=Escherichia coli, GI1787016, Length=380, Percent_Identity=40, Blast_Score=286, Evalue=1e-78,
Organism=Escherichia coli, GI1790214, Length=368, Percent_Identity=38.3152173913043, Blast_Score=243, Evalue=1e-65,
Organism=Escherichia coli, GI87082221, Length=369, Percent_Identity=38.2113821138211, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1787605, Length=344, Percent_Identity=36.9186046511628, Blast_Score=202, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI115533224, Length=360, Percent_Identity=39.1666666666667, Blast_Score=238, Evalue=6e-63,
Organism=Caenorhabditis elegans, GI17510559, Length=401, Percent_Identity=34.9127182044888, Blast_Score=232, Evalue=3e-61,
Organism=Caenorhabditis elegans, GI17552642, Length=370, Percent_Identity=36.7567567567568, Blast_Score=228, Evalue=5e-60,
Organism=Caenorhabditis elegans, GI17555296, Length=361, Percent_Identity=37.1191135734072, Blast_Score=228, Evalue=6e-60,
Organism=Caenorhabditis elegans, GI71999646, Length=368, Percent_Identity=35.3260869565217, Blast_Score=219, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI71999644, Length=368, Percent_Identity=35.3260869565217, Blast_Score=218, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI17510309, Length=365, Percent_Identity=35.8904109589041, Blast_Score=216, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI17510307, Length=365, Percent_Identity=35.8904109589041, Blast_Score=215, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI71995514, Length=365, Percent_Identity=35.8904109589041, Blast_Score=215, Evalue=4e-56,
Organism=Caenorhabditis elegans, GI71995724, Length=361, Percent_Identity=33.5180055401662, Blast_Score=213, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17507121, Length=361, Percent_Identity=33.2409972299169, Blast_Score=212, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI86570094, Length=416, Percent_Identity=34.375, Blast_Score=209, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI71987143, Length=362, Percent_Identity=31.767955801105, Blast_Score=207, Evalue=8e-54,
Organism=Caenorhabditis elegans, GI71995718, Length=364, Percent_Identity=36.2637362637363, Blast_Score=204, Evalue=9e-53,
Organism=Caenorhabditis elegans, GI32565321, Length=426, Percent_Identity=31.2206572769953, Blast_Score=203, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17507945, Length=364, Percent_Identity=35.4395604395604, Blast_Score=203, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17507881, Length=390, Percent_Identity=33.3333333333333, Blast_Score=197, Evalue=7e-51,
Organism=Caenorhabditis elegans, GI17552114, Length=372, Percent_Identity=31.989247311828, Blast_Score=194, Evalue=6e-50,
Organism=Caenorhabditis elegans, GI17507877, Length=373, Percent_Identity=34.8525469168901, Blast_Score=194, Evalue=6e-50,
Organism=Caenorhabditis elegans, GI17537549, Length=414, Percent_Identity=32.6086956521739, Blast_Score=193, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI17509811, Length=375, Percent_Identity=32, Blast_Score=193, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI17507879, Length=383, Percent_Identity=33.9425587467363, Blast_Score=193, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI17505370, Length=348, Percent_Identity=33.9080459770115, Blast_Score=180, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17507641, Length=386, Percent_Identity=33.160621761658, Blast_Score=172, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI25148203, Length=417, Percent_Identity=27.8177458033573, Blast_Score=168, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI71982858, Length=368, Percent_Identity=30.7065217391304, Blast_Score=167, Evalue=8e-42,
Organism=Caenorhabditis elegans, GI193208216, Length=382, Percent_Identity=33.2460732984293, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI115532546, Length=388, Percent_Identity=31.1855670103093, Blast_Score=165, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI115532548, Length=382, Percent_Identity=31.151832460733, Blast_Score=165, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17508543, Length=381, Percent_Identity=28.3464566929134, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI32564046, Length=378, Percent_Identity=33.3333333333333, Blast_Score=162, Evalue=4e-40,
Organism=Caenorhabditis elegans, GI71990816, Length=387, Percent_Identity=32.5581395348837, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17536099, Length=401, Percent_Identity=28.6783042394015, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17536101, Length=401, Percent_Identity=28.6783042394015, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17536103, Length=404, Percent_Identity=29.2079207920792, Blast_Score=148, Evalue=5e-36,
Organism=Caenorhabditis elegans, GI193206561, Length=350, Percent_Identity=30, Blast_Score=146, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17556951, Length=374, Percent_Identity=28.6096256684492, Blast_Score=137, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17553716, Length=365, Percent_Identity=26.027397260274, Blast_Score=126, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI25148291, Length=330, Percent_Identity=27.8787878787879, Blast_Score=121, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI25148205, Length=341, Percent_Identity=26.099706744868, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI71997889, Length=371, Percent_Identity=27.7628032345013, Blast_Score=112, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71982862, Length=189, Percent_Identity=32.2751322751323, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17565430, Length=397, Percent_Identity=23.6775818639798, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71987152, Length=93, Percent_Identity=43.010752688172, Blast_Score=89, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6325138, Length=400, Percent_Identity=36.75, Blast_Score=241, Evalue=2e-64,
Organism=Saccharomyces cerevisiae, GI6324778, Length=427, Percent_Identity=33.9578454332553, Blast_Score=233, Evalue=5e-62,
Organism=Saccharomyces cerevisiae, GI6324217, Length=354, Percent_Identity=37.2881355932203, Blast_Score=229, Evalue=8e-61,
Organism=Saccharomyces cerevisiae, GI6321856, Length=373, Percent_Identity=36.1930294906166, Blast_Score=225, Evalue=1e-59,
Organism=Saccharomyces cerevisiae, GI6321360, Length=386, Percent_Identity=34.9740932642487, Blast_Score=223, Evalue=5e-59,
Organism=Saccharomyces cerevisiae, GI6323021, Length=360, Percent_Identity=36.1111111111111, Blast_Score=221, Evalue=1e-58,
Organism=Saccharomyces cerevisiae, GI6320173, Length=419, Percent_Identity=32.6968973747017, Blast_Score=206, Evalue=4e-54,
Organism=Saccharomyces cerevisiae, GI6320041, Length=360, Percent_Identity=34.4444444444444, Blast_Score=206, Evalue=6e-54,
Organism=Saccharomyces cerevisiae, GI6320224, Length=364, Percent_Identity=31.5934065934066, Blast_Score=204, Evalue=3e-53,
Organism=Saccharomyces cerevisiae, GI6322427, Length=361, Percent_Identity=32.6869806094183, Blast_Score=191, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6323947, Length=356, Percent_Identity=36.2359550561798, Blast_Score=191, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6320449, Length=390, Percent_Identity=32.3076923076923, Blast_Score=185, Evalue=1e-47,
Organism=Saccharomyces cerevisiae, GI6322912, Length=362, Percent_Identity=32.5966850828729, Blast_Score=180, Evalue=5e-46,
Organism=Saccharomyces cerevisiae, GI6322323, Length=362, Percent_Identity=32.5966850828729, Blast_Score=180, Evalue=5e-46,
Organism=Saccharomyces cerevisiae, GI6320119, Length=374, Percent_Identity=34.4919786096257, Blast_Score=178, Evalue=1e-45,
Organism=Saccharomyces cerevisiae, GI6324620, Length=374, Percent_Identity=31.283422459893, Blast_Score=175, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6321963, Length=426, Percent_Identity=31.924882629108, Blast_Score=171, Evalue=3e-43,
Organism=Saccharomyces cerevisiae, GI6321111, Length=371, Percent_Identity=30.9973045822102, Blast_Score=165, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6323306, Length=411, Percent_Identity=27.7372262773723, Blast_Score=161, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6321267, Length=371, Percent_Identity=32.3450134770889, Blast_Score=157, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6320400, Length=383, Percent_Identity=30.5483028720627, Blast_Score=151, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6319714, Length=356, Percent_Identity=30.8988764044944, Blast_Score=150, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6319618, Length=400, Percent_Identity=27.75, Blast_Score=150, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6324366, Length=385, Percent_Identity=28.3116883116883, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6322876, Length=446, Percent_Identity=28.0269058295964, Blast_Score=130, Evalue=4e-31,
Organism=Drosophila melanogaster, GI28574962, Length=354, Percent_Identity=37.0056497175141, Blast_Score=238, Evalue=6e-63,
Organism=Drosophila melanogaster, GI21356161, Length=374, Percent_Identity=36.3636363636364, Blast_Score=238, Evalue=8e-63,
Organism=Drosophila melanogaster, GI24644479, Length=363, Percent_Identity=35.2617079889807, Blast_Score=234, Evalue=6e-62,
Organism=Drosophila melanogaster, GI24644487, Length=363, Percent_Identity=35.2617079889807, Blast_Score=234, Evalue=6e-62,
Organism=Drosophila melanogaster, GI45551833, Length=363, Percent_Identity=35.2617079889807, Blast_Score=234, Evalue=6e-62,
Organism=Drosophila melanogaster, GI24644485, Length=363, Percent_Identity=35.2617079889807, Blast_Score=234, Evalue=6e-62,
Organism=Drosophila melanogaster, GI281361218, Length=363, Percent_Identity=35.2617079889807, Blast_Score=234, Evalue=7e-62,
Organism=Drosophila melanogaster, GI24644481, Length=363, Percent_Identity=35.2617079889807, Blast_Score=234, Evalue=7e-62,
Organism=Drosophila melanogaster, GI24644483, Length=363, Percent_Identity=35.2617079889807, Blast_Score=234, Evalue=7e-62,
Organism=Drosophila melanogaster, GI24662330, Length=370, Percent_Identity=36.7567567567568, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI24584399, Length=362, Percent_Identity=38.121546961326, Blast_Score=233, Evalue=2e-61,
Organism=Drosophila melanogaster, GI17985987, Length=379, Percent_Identity=35.0923482849604, Blast_Score=225, Evalue=5e-59,
Organism=Drosophila melanogaster, GI21355075, Length=352, Percent_Identity=36.9318181818182, Blast_Score=221, Evalue=5e-58,
Organism=Drosophila melanogaster, GI24585582, Length=371, Percent_Identity=35.0404312668464, Blast_Score=221, Evalue=6e-58,
Organism=Drosophila melanogaster, GI18857967, Length=362, Percent_Identity=35.6353591160221, Blast_Score=218, Evalue=4e-57,
Organism=Drosophila melanogaster, GI24642151, Length=357, Percent_Identity=36.1344537815126, Blast_Score=216, Evalue=3e-56,
Organism=Drosophila melanogaster, GI24645031, Length=361, Percent_Identity=33.5180055401662, Blast_Score=212, Evalue=5e-55,
Organism=Drosophila melanogaster, GI17977678, Length=363, Percent_Identity=34.9862258953168, Blast_Score=211, Evalue=8e-55,
Organism=Drosophila melanogaster, GI28575014, Length=371, Percent_Identity=33.9622641509434, Blast_Score=199, Evalue=3e-51,
Organism=Drosophila melanogaster, GI24584994, Length=374, Percent_Identity=33.4224598930481, Blast_Score=199, Evalue=4e-51,
Organism=Drosophila melanogaster, GI24583281, Length=368, Percent_Identity=30.7065217391304, Blast_Score=195, Evalue=5e-50,
Organism=Drosophila melanogaster, GI24583279, Length=368, Percent_Identity=30.7065217391304, Blast_Score=195, Evalue=5e-50,
Organism=Drosophila melanogaster, GI281365720, Length=315, Percent_Identity=34.6031746031746, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI17136814, Length=382, Percent_Identity=31.9371727748691, Blast_Score=183, Evalue=2e-46,
Organism=Drosophila melanogaster, GI24643725, Length=397, Percent_Identity=30.9823677581864, Blast_Score=182, Evalue=4e-46,
Organism=Drosophila melanogaster, GI24582080, Length=362, Percent_Identity=32.0441988950276, Blast_Score=179, Evalue=3e-45,
Organism=Drosophila melanogaster, GI24582078, Length=362, Percent_Identity=32.0441988950276, Blast_Score=179, Evalue=3e-45,
Organism=Drosophila melanogaster, GI17136248, Length=362, Percent_Identity=32.0441988950276, Blast_Score=179, Evalue=3e-45,
Organism=Drosophila melanogaster, GI24582075, Length=362, Percent_Identity=32.0441988950276, Blast_Score=179, Evalue=3e-45,
Organism=Drosophila melanogaster, GI24666101, Length=357, Percent_Identity=32.7731092436975, Blast_Score=170, Evalue=2e-42,
Organism=Drosophila melanogaster, GI24581954, Length=370, Percent_Identity=30.5405405405405, Blast_Score=167, Evalue=2e-41,
Organism=Drosophila melanogaster, GI24581952, Length=370, Percent_Identity=30.5405405405405, Blast_Score=167, Evalue=2e-41,
Organism=Drosophila melanogaster, GI24581956, Length=370, Percent_Identity=30.5405405405405, Blast_Score=167, Evalue=2e-41,
Organism=Drosophila melanogaster, GI19920478, Length=381, Percent_Identity=33.0708661417323, Blast_Score=160, Evalue=1e-39,
Organism=Drosophila melanogaster, GI28571808, Length=363, Percent_Identity=30.8539944903581, Blast_Score=159, Evalue=3e-39,
Organism=Drosophila melanogaster, GI28571809, Length=363, Percent_Identity=30.8539944903581, Blast_Score=159, Evalue=3e-39,
Organism=Drosophila melanogaster, GI24642822, Length=388, Percent_Identity=29.3814432989691, Blast_Score=157, Evalue=1e-38,
Organism=Drosophila melanogaster, GI17136666, Length=424, Percent_Identity=29.2452830188679, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI17647335, Length=429, Percent_Identity=26.8065268065268, Blast_Score=144, Evalue=9e-35,
Organism=Drosophila melanogaster, GI21355559, Length=397, Percent_Identity=30.4785894206549, Blast_Score=141, Evalue=9e-34,
Organism=Drosophila melanogaster, GI20130173, Length=345, Percent_Identity=31.304347826087, Blast_Score=138, Evalue=6e-33,
Organism=Drosophila melanogaster, GI28571338, Length=451, Percent_Identity=28.6031042128603, Blast_Score=132, Evalue=5e-31,
Organism=Drosophila melanogaster, GI18859659, Length=451, Percent_Identity=28.6031042128603, Blast_Score=132, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24668515, Length=326, Percent_Identity=29.1411042944785, Blast_Score=132, Evalue=6e-31,
Organism=Drosophila melanogaster, GI24640164, Length=352, Percent_Identity=26.7045454545455, Blast_Score=117, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000629
- InterPro:   IPR014014 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 45872; Mature: 45741

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRMQFEDLQLDPRLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLL
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHEECCCCCCCHHHHHH
PALQHLLDFPRRYGGRARVLILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGPQE
HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
EALQKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVETIAIESVG
HHHHCCCCEEEECCHHHHHHHHCCCCCHHHEEEEEECCCHHHHHCCHHHHHHHHHHHHCC
RKQTMLFSATLEGSDVGRFSHELLTNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLC
CCEEEEEEEECCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH
ALLKQEEVQRTIVFVKTREAVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVN
HHHHHHHHHHEEEEEEHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCEE
ILLATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVV
EEEEECHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHH
GKIERYIEQPLKRRFVKDLRPKNKEAKPPGKKKPGPEGKNFSKKNKKKKKK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
PRMQFEDLQLDPRLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLL
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHEECCCCCCCHHHHHH
PALQHLLDFPRRYGGRARVLILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGPQE
HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
EALQKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVETIAIESVG
HHHHCCCCEEEECCHHHHHHHHCCCCCHHHEEEEEECCCHHHHHCCHHHHHHHHHHHHCC
RKQTMLFSATLEGSDVGRFSHELLTNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLC
CCEEEEEEEECCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH
ALLKQEEVQRTIVFVKTREAVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVN
HHHHHHHHHHEEEEEEHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCEE
ILLATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVV
EEEEECHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHH
GKIERYIEQPLKRRFVKDLRPKNKEAKPPGKKKPGPEGKNFSKKNKKKKKK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]