Click here to switch to the map view.

The map label for this gene is ydcP [H]

Identifier: 167622756

GI number: 167622756

Start: 1018503

End: 1020452

Strand: Direct

Name: ydcP [H]

Synonym: Shal_0816

Alternate gene names: 167622756

Gene position: 1018503-1020452 (Clockwise)

Preceding gene: 167622755

Following gene: 167622757

Centisome position: 19.49

GC content: 48.56

Gene sequence:

>1950_bases
ATGAGCAATGTTGGCATCTATACTCCTAGCGATAAGCCCAGCGACAAGCCAGCTGACGGTGCGCGCACTCCTGTAGAGAA
GCAAAACAATCGTCTAGAGCTGCTGGCTCCGGCAAAAAATGCTGACTTGGGTATCGAAGCCATTCGCCATGGTGCCGATG
CTGTGTATATCGGTGGTCCCGCCTTCGGTGCGCGAGCCACTGCCGGTAATAGTGTCGAAGATATCGCGCGCTTATGTACC
TTTGCTCATCAATATCACGCCCAAGTCTTTGTCGCCATCAATACCATCTTGATGGACGATGAGCTTAAAGCGGCGCAAAA
ACTCATCTGGGAAGTCTACGAGGCAGGTGCCGATGCGCTTATCGTGCAAGATATGGGCATATTGCAGCTGGACTTGCCGC
CTATTGCCCTGCATGCCAGTACGCAGATGGATAACCGTAGTCCAGAAAAAGTCGCCTTCTTAGAGCAGGTCGGCTTTTCT
CAGGTGGTGTTAGCCCGTGAACTAGGCTTAAGCCAAATTCGCGATATTGCCGCTAACACCAATATGCAGATAGAGTTCTT
TATTCATGGCGCACTTTGTGTGGCCTTTAGCGGCTTATGTAACTTAAGTCACTCGTTCAGTAACCGCAGTGCCAACCGCG
GTGAATGCTCGCAGATGTGCCGTCTACCAGGCGACTTAAAAACCCGTCAGGGTGAAGTGTTGGCACAAAATGAGCACCTA
TTATCCCTTAAAGATAATAACCAAACAGACAACTTAGAAGCCTTGATCGACGCCGGTGTGCGCTCATTTAAAATCGAGGG
CCGCTTAAAAGACTTAAGCTACGTTAAAAACGTCACCGCCCATTATCGTCAAGAGCTAGATAAGATTATTGCGAGGCGTC
CTGAGTTTGTCGCCTCATCCCATGGCCGTTGTGAGCACAGCTTTACCCCGGATCCTGAAAAGACCTTTAACCGCGGTAAG
ACAGACTATTTTGTCCATGAACGTAGTCAAGGCATGAATGATTTTCGCTCGCCTAAATATATCGGTGAAGAGGTCGCGAC
GGTTAAACACATTGGTAGCGATTTTATTGAAGTGACCTCAACTGAAACCTTTAACAATGGCGACGGTCTGTGTTTCTTCC
CAAGTGATTATGCCGAGGCTAAGCAGTCAGATGACAAGCTAAAGGGCCTACGTGTAAACCGCGCCGACGGCTTGAAGTTA
TTTGTGCTGCGCATGCCAAAAGAGCTAAAAGTGGGCATGACGATTTACCGTAATCATAATCAAGCATTTGAAGCGGTATT
GGCCAAAGAGTCGGCTAAGCGCATCATCGGCGTAGATTTAGTCTTGGCCGATACCTGTGATGGCGTGTCACTGACCATGA
CAGACGTTTATGGTCACAGTGCCACTGAGTCATTAGTCGTTGAGAAAACGGCGGCAACCGATATCGAAAAAGCCCAGCAA
GGCTTGCGCAAGCAGCTGGCAAAGCTGGGTAGCACCGATTTTAAGGCTCACAACATCAGCATCGAAACTGCCGAGACCTG
GTTTATCCCAACATCACTGCTAAATGGTCTTCGTCGTGACACCGTGGCGGCACTAGAGCTGGCGAGAGCCAACGATTATC
AGCGTCCTCAGGCTTGGTCATATAACCAAGATGCCGTATACCCTGTTAAGCATTTGAGCTATCTAGGTAATGTGGCGAAC
GAAAAGGCTAAGGCGTTCTATCAACGTCATGGCGTGATTGAAATTCAAGATACCTACGAGAAAAACGGTATCACTGAAGA
TGTGCCATTAATGGTGACTAAGCACTGCCTGCGCTTTAACTTCAACTTGTGTCCGAAACAGGTGCCTGGGATCAAGGCCG
ATCCTATGGTGCTAGAAATTGGTAAAGATGTATTAAAGCTGGTGTTTGACTGCCCGAAATGTGAAATGATGGTGGTCGGT
GAAAACAGGCAAGTTCGCTCAAAGGATTAA

Upstream 100 bases:

>100_bases
TGCTTAAAAATTGATTTAATATTAGCTAACGCCAAAGCTTGCCAATTTTGCTATAATCTTCGCCCAAAATATTTGTGTTA
ACCCTTTTTGAGTGATTTTT

Downstream 100 bases:

>100_bases
CCCTGTTAGGTTTAGCGCTTATATTTAAGGCTTAGCTTTTAGGCTAGGCTTTAGATTTATTGAATAAAGGAATATAGACA
ATGGGATTATTAGATTCACT

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 648

Protein sequence:

>649_residues
MSNVGIYTPSDKPSDKPADGARTPVEKQNNRLELLAPAKNADLGIEAIRHGADAVYIGGPAFGARATAGNSVEDIARLCT
FAHQYHAQVFVAINTILMDDELKAAQKLIWEVYEAGADALIVQDMGILQLDLPPIALHASTQMDNRSPEKVAFLEQVGFS
QVVLARELGLSQIRDIAANTNMQIEFFIHGALCVAFSGLCNLSHSFSNRSANRGECSQMCRLPGDLKTRQGEVLAQNEHL
LSLKDNNQTDNLEALIDAGVRSFKIEGRLKDLSYVKNVTAHYRQELDKIIARRPEFVASSHGRCEHSFTPDPEKTFNRGK
TDYFVHERSQGMNDFRSPKYIGEEVATVKHIGSDFIEVTSTETFNNGDGLCFFPSDYAEAKQSDDKLKGLRVNRADGLKL
FVLRMPKELKVGMTIYRNHNQAFEAVLAKESAKRIIGVDLVLADTCDGVSLTMTDVYGHSATESLVVEKTAATDIEKAQQ
GLRKQLAKLGSTDFKAHNISIETAETWFIPTSLLNGLRRDTVAALELARANDYQRPQAWSYNQDAVYPVKHLSYLGNVAN
EKAKAFYQRHGVIEIQDTYEKNGITEDVPLMVTKHCLRFNFNLCPKQVPGIKADPMVLEIGKDVLKLVFDCPKCEMMVVG
ENRQVRSKD

Sequences:

>Translated_649_residues
MSNVGIYTPSDKPSDKPADGARTPVEKQNNRLELLAPAKNADLGIEAIRHGADAVYIGGPAFGARATAGNSVEDIARLCT
FAHQYHAQVFVAINTILMDDELKAAQKLIWEVYEAGADALIVQDMGILQLDLPPIALHASTQMDNRSPEKVAFLEQVGFS
QVVLARELGLSQIRDIAANTNMQIEFFIHGALCVAFSGLCNLSHSFSNRSANRGECSQMCRLPGDLKTRQGEVLAQNEHL
LSLKDNNQTDNLEALIDAGVRSFKIEGRLKDLSYVKNVTAHYRQELDKIIARRPEFVASSHGRCEHSFTPDPEKTFNRGK
TDYFVHERSQGMNDFRSPKYIGEEVATVKHIGSDFIEVTSTETFNNGDGLCFFPSDYAEAKQSDDKLKGLRVNRADGLKL
FVLRMPKELKVGMTIYRNHNQAFEAVLAKESAKRIIGVDLVLADTCDGVSLTMTDVYGHSATESLVVEKTAATDIEKAQQ
GLRKQLAKLGSTDFKAHNISIETAETWFIPTSLLNGLRRDTVAALELARANDYQRPQAWSYNQDAVYPVKHLSYLGNVAN
EKAKAFYQRHGVIEIQDTYEKNGITEDVPLMVTKHCLRFNFNLCPKQVPGIKADPMVLEIGKDVLKLVFDCPKCEMMVVG
ENRQVRSKD
>Mature_648_residues
SNVGIYTPSDKPSDKPADGARTPVEKQNNRLELLAPAKNADLGIEAIRHGADAVYIGGPAFGARATAGNSVEDIARLCTF
AHQYHAQVFVAINTILMDDELKAAQKLIWEVYEAGADALIVQDMGILQLDLPPIALHASTQMDNRSPEKVAFLEQVGFSQ
VVLARELGLSQIRDIAANTNMQIEFFIHGALCVAFSGLCNLSHSFSNRSANRGECSQMCRLPGDLKTRQGEVLAQNEHLL
SLKDNNQTDNLEALIDAGVRSFKIEGRLKDLSYVKNVTAHYRQELDKIIARRPEFVASSHGRCEHSFTPDPEKTFNRGKT
DYFVHERSQGMNDFRSPKYIGEEVATVKHIGSDFIEVTSTETFNNGDGLCFFPSDYAEAKQSDDKLKGLRVNRADGLKLF
VLRMPKELKVGMTIYRNHNQAFEAVLAKESAKRIIGVDLVLADTCDGVSLTMTDVYGHSATESLVVEKTAATDIEKAQQG
LRKQLAKLGSTDFKAHNISIETAETWFIPTSLLNGLRRDTVAALELARANDYQRPQAWSYNQDAVYPVKHLSYLGNVANE
KAKAFYQRHGVIEIQDTYEKNGITEDVPLMVTKHCLRFNFNLCPKQVPGIKADPMVLEIGKDVLKLVFDCPKCEMMVVGE
NRQVRSKD

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=626, Percent_Identity=50.7987220447284, Blast_Score=592, Evalue=1e-170,
Organism=Escherichia coli, GI1788397, Length=443, Percent_Identity=26.410835214447, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1789548, Length=306, Percent_Identity=30.718954248366, Blast_Score=112, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 72088; Mature: 71956

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVGIYTPSDKPSDKPADGARTPVEKQNNRLELLAPAKNADLGIEAIRHGADAVYIGGP
CCCCCEECCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCCCHHHHHCCCCEEEECCC
AFGARATAGNSVEDIARLCTFAHQYHAQVFVAINTILMDDELKAAQKLIWEVYEAGADAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEHHEECHHHHHHHHHHHHHHHCCCCEE
IVQDMGILQLDLPPIALHASTQMDNRSPEKVAFLEQVGFSQVVLARELGLSQIRDIAANT
EEECCCEEEECCCCEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHCHHHHHHHHCCC
NMQIEFFIHGALCVAFSGLCNLSHSFSNRSANRGECSQMCRLPGDLKTRQGEVLAQNEHL
CCEEEEEEHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCEE
LSLKDNNQTDNLEALIDAGVRSFKIEGRLKDLSYVKNVTAHYRQELDKIIARRPEFVASS
EEECCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
HGRCEHSFTPDPEKTFNRGKTDYFVHERSQGMNDFRSPKYIGEEVATVKHIGSDFIEVTS
CCCCCCCCCCCHHHHHCCCCCEEEEECHHCCCCHHCCCHHHHHHHHHHHHHCCCCEEEEC
TETFNNGDGLCFFPSDYAEAKQSDDKLKGLRVNRADGLKLFVLRMPKELKVGMTIYRNHN
CCEECCCCEEEECCCHHHHHHCCCCHHCCEEEECCCCCEEEEEECCCHHHCCEEEEECCH
QAFEAVLAKESAKRIIGVDLVLADTCDGVSLTMTDVYGHSATESLVVEKTAATDIEKAQQ
HHHHHHHHHHHHHHEEEEEEEEECCCCCCEEEEEECCCCCCCHHHEEEHHHHHHHHHHHH
GLRKQLAKLGSTDFKAHNISIETAETWFIPTSLLNGLRRDTVAALELARANDYQRPQAWS
HHHHHHHHCCCCCCEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
YNQDAVYPVKHLSYLGNVANEKAKAFYQRHGVIEIQDTYEKNGITEDVPLMVTKHCLRFN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHCCCCCCCCHHHHHHHHHHCC
FNLCPKQVPGIKADPMVLEIGKDVLKLVFDCPKCEMMVVGENRQVRSKD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
SNVGIYTPSDKPSDKPADGARTPVEKQNNRLELLAPAKNADLGIEAIRHGADAVYIGGP
CCCCEECCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCCCHHHHHCCCCEEEECCC
AFGARATAGNSVEDIARLCTFAHQYHAQVFVAINTILMDDELKAAQKLIWEVYEAGADAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEHHEECHHHHHHHHHHHHHHHCCCCEE
IVQDMGILQLDLPPIALHASTQMDNRSPEKVAFLEQVGFSQVVLARELGLSQIRDIAANT
EEECCCEEEECCCCEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHCHHHHHHHHCCC
NMQIEFFIHGALCVAFSGLCNLSHSFSNRSANRGECSQMCRLPGDLKTRQGEVLAQNEHL
CCEEEEEEHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCEE
LSLKDNNQTDNLEALIDAGVRSFKIEGRLKDLSYVKNVTAHYRQELDKIIARRPEFVASS
EEECCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
HGRCEHSFTPDPEKTFNRGKTDYFVHERSQGMNDFRSPKYIGEEVATVKHIGSDFIEVTS
CCCCCCCCCCCHHHHHCCCCCEEEEECHHCCCCHHCCCHHHHHHHHHHHHHCCCCEEEEC
TETFNNGDGLCFFPSDYAEAKQSDDKLKGLRVNRADGLKLFVLRMPKELKVGMTIYRNHN
CCEECCCCEEEECCCHHHHHHCCCCHHCCEEEECCCCCEEEEEECCCHHHCCEEEEECCH
QAFEAVLAKESAKRIIGVDLVLADTCDGVSLTMTDVYGHSATESLVVEKTAATDIEKAQQ
HHHHHHHHHHHHHHEEEEEEEEECCCCCCEEEEEECCCCCCCHHHEEEHHHHHHHHHHHH
GLRKQLAKLGSTDFKAHNISIETAETWFIPTSLLNGLRRDTVAALELARANDYQRPQAWS
HHHHHHHHCCCCCCEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
YNQDAVYPVKHLSYLGNVANEKAKAFYQRHGVIEIQDTYEKNGITEDVPLMVTKHCLRFN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHCCCCCCCCHHHHHHHHHHCC
FNLCPKQVPGIKADPMVLEIGKDVLKLVFDCPKCEMMVVGENRQVRSKD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]