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The map label for this gene is ubiD [H]

Identifier: 167622525

GI number: 167622525

Start: 701758

End: 703239

Strand: Reverse

Name: ubiD [H]

Synonym: Shal_0585

Alternate gene names: 167622525

Gene position: 703239-701758 (Counterclockwise)

Preceding gene: 167622527

Following gene: 167622524

Centisome position: 13.45

GC content: 50.47

Gene sequence:

>1482_bases
ATGAGTTTTAAGGATTTACGCAGCTTTATAGACCACTTAGAAACCAATGGTGAGCTTAAGCGCATTAGTCATCCCGTCGA
TCCTCATTTGGAAATGACAGAGATTGCCGATCGTGTATTGCGTGCCAAGGGGCCGGCTCTGTTATTTGAAAATCCAGTCG
GCAACGACATGCCGGTACTGGCCAATCTTTTTGGCACCCCAAAACGGGTGGCGATGGCATTAGGTAAAGAAGATCCTATC
GCGCTGCGCGATGTGGGTGAACTACTCGCTTTTCTAAAAGAGCCCGAGCCGCCTAGCGGCTTTAAAGATGCCATAGCTAA
GATCCCAATGTTTAAGCAAGCCTTAAATATGCCGCCAAAGACGGTACGTAATCCACCTTGCCAACAGGTCGTCAAAACTG
GCGAAGAGGTCGACTTGACCAAGCTGCCAATTCAGCACTGCTGGCCTGGCGATGTTGCGCCGCTAGTCACTTGGGGACTC
ACCATCACCAAGGGGCCACGCCAAAAACGTCAGAACTTGGGCATTTATCGCCAGCAACTGCTTGGCAAAGATAAGCTGAT
TATGCGCTGGCTAGATCATCGTGGCGGTGCATTAGACTTTAAAGATTTTAAAGAGAAACATCCGGGTGAGCGTTACCCTG
TGGTCGTGGCATTAGGCGCCGATCCTGTGACCATTTTAGGCGCAGTGACTCCAGTCCCCGATGCCATGAGCGAATATGCT
TTCGCGGGCCTATTGCGCGGTGAGCGCACCGAAGTCTGTAAAGCCTTAAGCTGTGACTTAGAGGTCCCTGCCACCAGCGA
AATAATCTTAGAAGGTTATATCGATCCCGAAGAGATGGCAGAAGAAGGCCCTTACGGCGATCACACAGGTTACTACAACG
AAACCGACTCATTCCCAGTGTTTACCGTGACTCATATGACTCACAGAAAAGACGCGATTTACCACAGCACCTACACCGGC
CGTCCACCAGATGAGCCAGCCATGCTAGGTGTGGCACTGAACGAGGTGTTCGTGCCGATTTTGCGTAAACAGTATCCTGA
AATTATCGACTTTTACCTGCCACCAGAAGGTTGCTCGTATCGTATGGCGGTGATCTCGATTCGTAAGCAATACCCAGGGC
ACGCCAAACGTGTGATGATGGGCGCATGGTCATTCCTACGCCAGTTTATGTACACCAAGTTTATTGTGGTGGTCGACGAA
GATGTCAATTGCCGTGACTGGAACGATGTGATCTGGGCGATTACTACCCGTATGGATCCCAAGCGCGATACCGTGATGAT
TGAAAATACCCCTATCGATTATCTCGATTTTGCCTCGCCAGTTGCGGGTCTAGGCTCGAAAATGGGGATGGACGCCACGA
ACAAGTGGCAAGGTGAAACCGACCGCGAATGGGGCACTCCCATTGTAATGGATGAAGCTGTTAAACAGAAAGTCGATGCT
ATCTGGAATGATCTCGGTATCGATGATGCACCGACGCTGTAG

Upstream 100 bases:

>100_bases
ATTTACGATGTTCTACATTGATGAACAAGCGTTTAACGCACGTTGGAAATAGTGCTATAGTTCGCGCCATATCACAGTTT
ATAGCGATGAGAATTCCCCT

Downstream 100 bases:

>100_bases
GAATTTTTAGCGATCAACATTCGCTAAACTTTAAATAGCCTGCTGTAAGTTCGCAGGCTAAAAATTTAATATTGAATAAG
CTTCCACAGAGAAGCGCATC

Product: UbiD family decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MSFKDLRSFIDHLETNGELKRISHPVDPHLEMTEIADRVLRAKGPALLFENPVGNDMPVLANLFGTPKRVAMALGKEDPI
ALRDVGELLAFLKEPEPPSGFKDAIAKIPMFKQALNMPPKTVRNPPCQQVVKTGEEVDLTKLPIQHCWPGDVAPLVTWGL
TITKGPRQKRQNLGIYRQQLLGKDKLIMRWLDHRGGALDFKDFKEKHPGERYPVVVALGADPVTILGAVTPVPDAMSEYA
FAGLLRGERTEVCKALSCDLEVPATSEIILEGYIDPEEMAEEGPYGDHTGYYNETDSFPVFTVTHMTHRKDAIYHSTYTG
RPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDE
DVNCRDWNDVIWAITTRMDPKRDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWQGETDREWGTPIVMDEAVKQKVDA
IWNDLGIDDAPTL

Sequences:

>Translated_493_residues
MSFKDLRSFIDHLETNGELKRISHPVDPHLEMTEIADRVLRAKGPALLFENPVGNDMPVLANLFGTPKRVAMALGKEDPI
ALRDVGELLAFLKEPEPPSGFKDAIAKIPMFKQALNMPPKTVRNPPCQQVVKTGEEVDLTKLPIQHCWPGDVAPLVTWGL
TITKGPRQKRQNLGIYRQQLLGKDKLIMRWLDHRGGALDFKDFKEKHPGERYPVVVALGADPVTILGAVTPVPDAMSEYA
FAGLLRGERTEVCKALSCDLEVPATSEIILEGYIDPEEMAEEGPYGDHTGYYNETDSFPVFTVTHMTHRKDAIYHSTYTG
RPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDE
DVNCRDWNDVIWAITTRMDPKRDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWQGETDREWGTPIVMDEAVKQKVDA
IWNDLGIDDAPTL
>Mature_492_residues
SFKDLRSFIDHLETNGELKRISHPVDPHLEMTEIADRVLRAKGPALLFENPVGNDMPVLANLFGTPKRVAMALGKEDPIA
LRDVGELLAFLKEPEPPSGFKDAIAKIPMFKQALNMPPKTVRNPPCQQVVKTGEEVDLTKLPIQHCWPGDVAPLVTWGLT
ITKGPRQKRQNLGIYRQQLLGKDKLIMRWLDHRGGALDFKDFKEKHPGERYPVVVALGADPVTILGAVTPVPDAMSEYAF
AGLLRGERTEVCKALSCDLEVPATSEIILEGYIDPEEMAEEGPYGDHTGYYNETDSFPVFTVTHMTHRKDAIYHSTYTGR
PPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDED
VNCRDWNDVIWAITTRMDPKRDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWQGETDREWGTPIVMDEAVKQKVDAI
WNDLGIDDAPTL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=74.5379876796715, Blast_Score=781, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=450, Percent_Identity=25.1111111111111, Blast_Score=120, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 55439; Mature: 55308

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKDLRSFIDHLETNGELKRISHPVDPHLEMTEIADRVLRAKGPALLFENPVGNDMPVL
CCHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
ANLFGTPKRVAMALGKEDPIALRDVGELLAFLKEPEPPSGFKDAIAKIPMFKQALNMPPK
HHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCH
TVRNPPCQQVVKTGEEVDLTKLPIQHCWPGDVAPLVTWGLTITKGPRQKRQNLGIYRQQL
HCCCCCHHHHHHCCCCCCEEECCHHHCCCCCCHHHHHHCEEECCCHHHHHHHHHHHHHHH
LGKDKLIMRWLDHRGGALDFKDFKEKHPGERYPVVVALGADPVTILGAVTPVPDAMSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHH
FAGLLRGERTEVCKALSCDLEVPATSEIILEGYIDPEEMAEEGPYGDHTGYYNETDSFPV
HHHHHCCCHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCE
FTVTHMTHRKDAIYHSTYTGRPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSY
EEEEEHHHHCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCE
RMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDEDVNCRDWNDVIWAITTRMDP
EHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
KRDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWQGETDREWGTPIVMDEAVKQKVDA
CCCEEEEECCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
IWNDLGIDDAPTL
HHHHCCCCCCCCC
>Mature Secondary Structure 
SFKDLRSFIDHLETNGELKRISHPVDPHLEMTEIADRVLRAKGPALLFENPVGNDMPVL
CHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
ANLFGTPKRVAMALGKEDPIALRDVGELLAFLKEPEPPSGFKDAIAKIPMFKQALNMPPK
HHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCH
TVRNPPCQQVVKTGEEVDLTKLPIQHCWPGDVAPLVTWGLTITKGPRQKRQNLGIYRQQL
HCCCCCHHHHHHCCCCCCEEECCHHHCCCCCCHHHHHHCEEECCCHHHHHHHHHHHHHHH
LGKDKLIMRWLDHRGGALDFKDFKEKHPGERYPVVVALGADPVTILGAVTPVPDAMSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHH
FAGLLRGERTEVCKALSCDLEVPATSEIILEGYIDPEEMAEEGPYGDHTGYYNETDSFPV
HHHHHCCCHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCE
FTVTHMTHRKDAIYHSTYTGRPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSY
EEEEEHHHHCHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCE
RMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDEDVNCRDWNDVIWAITTRMDP
EHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
KRDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWQGETDREWGTPIVMDEAVKQKVDA
CCCEEEEECCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
IWNDLGIDDAPTL
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA