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The map label for this gene is nrfC [H]

Identifier: 167622495

GI number: 167622495

Start: 668155

End: 668862

Strand: Direct

Name: nrfC [H]

Synonym: Shal_0555

Alternate gene names: 167622495

Gene position: 668155-668862 (Clockwise)

Preceding gene: 167622494

Following gene: 167622496

Centisome position: 12.78

GC content: 47.18

Gene sequence:

>708_bases
GTGAGTGAAAATCTAGAGAGACGGAGGTTCCTTAAAGGTCTTGGAGCCAGCTCTTTGATATTAGCACCGCTTGGGTGTAG
CTCGGTCAAAGATAAGGAAGACACCAACAAGCCGCACTATGTAATGGTTTTCGACCAAAACAAATGTGTTGGTTGTGGTG
AGTGTAAGGAAGCCTGTAATAAGGCTAACCACTTACCCGAAGGTAAGTCTCGACTATTAATGGAAGAGCAATCAAGCGCC
ATTGAAGGTCAACCTTGTCCACACTGTGGTAAAACCAATGACTGTGGTTGTCAGCGTAAGTTTGTGCGCGTTTCATGTCA
GCAATGTAAGAACGCTCCTTGCGTAACAGTTTGCCCAACGGGCGCTGCACATCGTGATGAGAAGACTGGCATTGTGACCA
TGGATGCGGCGAAATGTGCGGGTTGTAAGTACTGTATCGGTGCTTGCCCATATGACGCACGTTTCATCAACAAAGAAACT
GACGTAGCCGACAACTGTGACTTCTGCCTAAACAGCAAGCTTGCCATTGGTGAGTTACCTGCATGTGTGCAGCAGTGCCG
TTACGATGCGCTGATCTTTGGTGATGCAAACGATCCAACTTCATATGTGAGTAAGCTATTAGCAGTTAAGGACTCGGTAC
GTATTAAGCCGGGCTTCGGTACTGAACCTAGCCTACGTTACATCCCTATTGTGAAGCTAGGAGTATAG

Upstream 100 bases:

>100_bases
GTTGATTTCGACTAACTCATTAACGCCTAAATAAACGCTAGTAAAAATATTAAATTAAAAAAATAACGTGTCGGTTGAAT
ACCGATATTCGGAGGATGCT

Downstream 100 bases:

>100_bases
TCATGGACGGTAATATTGAATTTACAATGGGCCTTTCACAAGGCATCGCTTGGCCTTGGCCAATTGCGGTTTACCTGTTC
TTTGCTGGTATCTCTGGTGG

Product: 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSENLERRRFLKGLGASSLILAPLGCSSVKDKEDTNKPHYVMVFDQNKCVGCGECKEACNKANHLPEGKSRLLMEEQSSA
IEGQPCPHCGKTNDCGCQRKFVRVSCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKET
DVADNCDFCLNSKLAIGELPACVQQCRYDALIFGDANDPTSYVSKLLAVKDSVRIKPGFGTEPSLRYIPIVKLGV

Sequences:

>Translated_235_residues
MSENLERRRFLKGLGASSLILAPLGCSSVKDKEDTNKPHYVMVFDQNKCVGCGECKEACNKANHLPEGKSRLLMEEQSSA
IEGQPCPHCGKTNDCGCQRKFVRVSCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKET
DVADNCDFCLNSKLAIGELPACVQQCRYDALIFGDANDPTSYVSKLLAVKDSVRIKPGFGTEPSLRYIPIVKLGV
>Mature_234_residues
SENLERRRFLKGLGASSLILAPLGCSSVKDKEDTNKPHYVMVFDQNKCVGCGECKEACNKANHLPEGKSRLLMEEQSSAI
EGQPCPHCGKTNDCGCQRKFVRVSCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKETD
VADNCDFCLNSKLAIGELPACVQQCRYDALIFGDANDPTSYVSKLLAVKDSVRIKPGFGTEPSLRYIPIVKLGV

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=227, Percent_Identity=42.7312775330396, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI226510944, Length=196, Percent_Identity=42.3469387755102, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1789370, Length=227, Percent_Identity=30.3964757709251, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787872, Length=199, Percent_Identity=32.1608040201005, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787122, Length=199, Percent_Identity=31.1557788944724, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787749, Length=162, Percent_Identity=27.1604938271605, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787963, Length=178, Percent_Identity=29.7752808988764, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI2367245, Length=152, Percent_Identity=32.2368421052632, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787740, Length=96, Percent_Identity=34.375, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787478, Length=96, Percent_Identity=34.375, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790326, Length=182, Percent_Identity=26.3736263736264, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25529; Mature: 25397

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
9.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
10.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENLERRRFLKGLGASSLILAPLGCSSVKDKEDTNKPHYVMVFDQNKCVGCGECKEACN
CCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHH
KANHLPEGKSRLLMEEQSSAIEGQPCPHCGKTNDCGCQRKFVRVSCQQCKNAPCVTVCPT
HHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
GAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKETDVADNCDFCLNSKLAIGELP
CCCCCCCCCCEEEECCHHHCCCCCEECCCCCCCEECCCCCCCCCCCCHHHCCCCCCCHHH
ACVQQCRYDALIFGDANDPTSYVSKLLAVKDSVRIKPGFGTEPSLRYIPIVKLGV
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
SENLERRRFLKGLGASSLILAPLGCSSVKDKEDTNKPHYVMVFDQNKCVGCGECKEACN
CCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHH
KANHLPEGKSRLLMEEQSSAIEGQPCPHCGKTNDCGCQRKFVRVSCQQCKNAPCVTVCPT
HHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
GAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKETDVADNCDFCLNSKLAIGELP
CCCCCCCCCCEEEECCHHHCCCCCEECCCCCCCEECCCCCCCCCCCCHHHCCCCCCCHHH
ACVQQCRYDALIFGDANDPTSYVSKLLAVKDSVRIKPGFGTEPSLRYIPIVKLGV
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]