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The map label for this gene is yciR [C]

Identifier: 167622481

GI number: 167622481

Start: 649940

End: 652024

Strand: Reverse

Name: yciR [C]

Synonym: Shal_0541

Alternate gene names: 167622481

Gene position: 652024-649940 (Counterclockwise)

Preceding gene: 167622485

Following gene: 167622476

Centisome position: 12.47

GC content: 42.25

Gene sequence:

>2085_bases
ATGAAAACAAATACAAATTTCCCGATCAACTCAGGTTATCTTTGCCTAACCATGGTCATTTTTAATGCCTGCATAGGCTT
ATTTTGTCTATTGGGTCTCCCAGCTCAGAGCTCTACACTACCACTTACGATACTGTTGCCATTAGCCAATATCATCGTAT
TTGGTGTCATTTTCAGCCGTTTTTATAATCAACACAAGCACGCCTGCACGCTAAGCGAAGCTCCATTAAATACCAATGAA
TTAAGCCTGAAAGTGGATCATAAAACCGCGCAGTTAAATCAACTGAGAAAAACAGAATTAAGCGCCAGAACGGTCAGTAA
AAATGTCCAACTTGAAGTAGAAGTAGAACAAGCTCAAACCATAATGACATTAAAAGATGATTTACAACTTCTATCTGCCA
TCTTAGATTCCACTGCTGTCGCGATTTATGCCGTGGATAATAAAGGCCTGTGCATCTTTGCAAATCCTCAATGCGCTCTG
TTACTCGGATATAGTCACCCTTCGCAATTACTTAAATCCAATATGCAGCAACTGGTTAACCAAAGAGCCGAGTCACCAAA
TACTGAGTCATCAATCCAAGATCTAGAAAATATTAAGGAAGACATTTTTTGGAAGGCTGATGGTAGCAGTTTTCCTGTCG
AATATAATTCACAGCCTCTAACCTTAAATAGCCACGTCAATGGTGCAGTCATCTCTTTCTATGACAATAGTGAACGCCGA
GAAGCAGAAGAACTGATCCGCCGCCAAGCCCATTATGATACGTTAACTGACCTGCCCAACCGTTTCTTGGCTTTGAAGCG
TCTTGAGCAATTAGTTGAGTCCAGTGAAAGAAGCGGTAAAATGCTGGCGGTCATCTTTCTTGATTTAGATGACTTCAAAA
AAATTAACGACTCTTTAGGCCACGAGGCTGGAGATCTACTGCTTATCACTGCATCGGAGCGGCTATTAAAAACGACTAGA
GCAGAAGATACTGTAGGGCGTTTAGGTGGCGATGAATTTATCATTTTACTCGATGGCCTCTCGAGCGCTAATGATGCTCA
GCCTATTGCTGAAAACCTAATCGGTGGCTTTAGGAAGCCATTCTATATCGACAACCGACAACTTATCCTCACCGCCAGCA
TCGGGATTGCTATCTACCCTAACGATGGTGAAACCCCTTCAGAATTATTACGAAATGCTGATTCCGCCATGTACCACACT
AAGAGCATAGGCCGAAATACCTACTCATACTTCACCCACGCAATGAATAAAGAGGTTTCTCGTCGTCTTGCTATCGAAGA
ACAGATCCATGGTGCCTTAGAGCGCGGTGAGATCAGAGTACACTACCAGATCCAACTCGATATCAGGGATGGCAGTATAA
TGGGGGCCGAGGCGCTATTGCGTTGGAATAACCCAACTTTAGGCAGTGTCTCTCCGGCTGAGTTTATTCCAATTGCCGAA
CAAACCGGCATGATTGAACCTATGGGCGAGTTTGTTCTACAACAAGCATTAGAAACTGCACACATTTGGCAGAGAAAGTT
TAACGACAAGTTTAGAGTGGCAATAAACTTATCACCTCGCCAATTTAGAAATCCCAAACTCGTACAAACGATCATTGATA
AGGTTGAGAAGCTAGGTATGCATCCTAGTGATCTTGAGTTAGAGATCACAGAAGGAGTACTACTCAGTGGTCATGCTTAT
ACACTCGGTGCACTCATGCAGTTAAGTGAAGCAGGCTTCTATATATCAATGGATGACTTTGGTACTGGGTATTCTTCTCT
TAGCTATCTAAAAACTTACCCATTTACCATACTGAAAATCGATCGCAGCTTTATTCATGACATGAATAAAGACGATAAGA
GTAACGATCTTATCATCGCCACAATCGAGATGGCTCACGCTTTAGGCATTAGAGTTATTGCAGAGGGAGTAGAGACCCAA
GAACAACTCGATGAGTTAAGCTTTATGATGTGTGATTACGCTCAAGGCTTTTTGATCAGCAAGCCTGTGCCGCTAAAAGA
GCTATTAAAAATTGGCTCTCGCTATAGAAAAATGCATGAACAGAACACATTTCAAGGAGAGTCTGAAGCCTTAAACATCG
TCTAG

Upstream 100 bases:

>100_bases
CTTCAACCCTACCCTTTTAGCTCATATCCGATCTGCGGCAGCCTTGTTAACGATTTCTGAGGCTCAATTATTCTCTCGTA
GCAGCAGTGGTAGTTAATAT

Downstream 100 bases:

>100_bases
CGATTAAAAATATACGGCTAATATGTCAGATCTAGTCTGGACTAATACTTACGGCTAATCACGGTACCGTTATAATAAAG
GCAGTCTTCAACTCTTTGTT

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 694; Mature: 694

Protein sequence:

>694_residues
MKTNTNFPINSGYLCLTMVIFNACIGLFCLLGLPAQSSTLPLTILLPLANIIVFGVIFSRFYNQHKHACTLSEAPLNTNE
LSLKVDHKTAQLNQLRKTELSARTVSKNVQLEVEVEQAQTIMTLKDDLQLLSAILDSTAVAIYAVDNKGLCIFANPQCAL
LLGYSHPSQLLKSNMQQLVNQRAESPNTESSIQDLENIKEDIFWKADGSSFPVEYNSQPLTLNSHVNGAVISFYDNSERR
EAEELIRRQAHYDTLTDLPNRFLALKRLEQLVESSERSGKMLAVIFLDLDDFKKINDSLGHEAGDLLLITASERLLKTTR
AEDTVGRLGGDEFIILLDGLSSANDAQPIAENLIGGFRKPFYIDNRQLILTASIGIAIYPNDGETPSELLRNADSAMYHT
KSIGRNTYSYFTHAMNKEVSRRLAIEEQIHGALERGEIRVHYQIQLDIRDGSIMGAEALLRWNNPTLGSVSPAEFIPIAE
QTGMIEPMGEFVLQQALETAHIWQRKFNDKFRVAINLSPRQFRNPKLVQTIIDKVEKLGMHPSDLELEITEGVLLSGHAY
TLGALMQLSEAGFYISMDDFGTGYSSLSYLKTYPFTILKIDRSFIHDMNKDDKSNDLIIATIEMAHALGIRVIAEGVETQ
EQLDELSFMMCDYAQGFLISKPVPLKELLKIGSRYRKMHEQNTFQGESEALNIV

Sequences:

>Translated_694_residues
MKTNTNFPINSGYLCLTMVIFNACIGLFCLLGLPAQSSTLPLTILLPLANIIVFGVIFSRFYNQHKHACTLSEAPLNTNE
LSLKVDHKTAQLNQLRKTELSARTVSKNVQLEVEVEQAQTIMTLKDDLQLLSAILDSTAVAIYAVDNKGLCIFANPQCAL
LLGYSHPSQLLKSNMQQLVNQRAESPNTESSIQDLENIKEDIFWKADGSSFPVEYNSQPLTLNSHVNGAVISFYDNSERR
EAEELIRRQAHYDTLTDLPNRFLALKRLEQLVESSERSGKMLAVIFLDLDDFKKINDSLGHEAGDLLLITASERLLKTTR
AEDTVGRLGGDEFIILLDGLSSANDAQPIAENLIGGFRKPFYIDNRQLILTASIGIAIYPNDGETPSELLRNADSAMYHT
KSIGRNTYSYFTHAMNKEVSRRLAIEEQIHGALERGEIRVHYQIQLDIRDGSIMGAEALLRWNNPTLGSVSPAEFIPIAE
QTGMIEPMGEFVLQQALETAHIWQRKFNDKFRVAINLSPRQFRNPKLVQTIIDKVEKLGMHPSDLELEITEGVLLSGHAY
TLGALMQLSEAGFYISMDDFGTGYSSLSYLKTYPFTILKIDRSFIHDMNKDDKSNDLIIATIEMAHALGIRVIAEGVETQ
EQLDELSFMMCDYAQGFLISKPVPLKELLKIGSRYRKMHEQNTFQGESEALNIV
>Mature_694_residues
MKTNTNFPINSGYLCLTMVIFNACIGLFCLLGLPAQSSTLPLTILLPLANIIVFGVIFSRFYNQHKHACTLSEAPLNTNE
LSLKVDHKTAQLNQLRKTELSARTVSKNVQLEVEVEQAQTIMTLKDDLQLLSAILDSTAVAIYAVDNKGLCIFANPQCAL
LLGYSHPSQLLKSNMQQLVNQRAESPNTESSIQDLENIKEDIFWKADGSSFPVEYNSQPLTLNSHVNGAVISFYDNSERR
EAEELIRRQAHYDTLTDLPNRFLALKRLEQLVESSERSGKMLAVIFLDLDDFKKINDSLGHEAGDLLLITASERLLKTTR
AEDTVGRLGGDEFIILLDGLSSANDAQPIAENLIGGFRKPFYIDNRQLILTASIGIAIYPNDGETPSELLRNADSAMYHT
KSIGRNTYSYFTHAMNKEVSRRLAIEEQIHGALERGEIRVHYQIQLDIRDGSIMGAEALLRWNNPTLGSVSPAEFIPIAE
QTGMIEPMGEFVLQQALETAHIWQRKFNDKFRVAINLSPRQFRNPKLVQTIIDKVEKLGMHPSDLELEITEGVLLSGHAY
TLGALMQLSEAGFYISMDDFGTGYSSLSYLKTYPFTILKIDRSFIHDMNKDDKSNDLIIATIEMAHALGIRVIAEGVETQ
EQLDELSFMMCDYAQGFLISKPVPLKELLKIGSRYRKMHEQNTFQGESEALNIV

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=448, Percent_Identity=33.7053571428571, Blast_Score=272, Evalue=6e-74,
Organism=Escherichia coli, GI87081921, Length=440, Percent_Identity=30.9090909090909, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI226510982, Length=430, Percent_Identity=27.2093023255814, Blast_Score=174, Evalue=2e-44,
Organism=Escherichia coli, GI87081845, Length=257, Percent_Identity=35.0194552529183, Blast_Score=162, Evalue=7e-41,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=35.9504132231405, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=34.2741935483871, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=34.4, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1786507, Length=263, Percent_Identity=31.1787072243346, Blast_Score=139, Evalue=8e-34,
Organism=Escherichia coli, GI1787055, Length=257, Percent_Identity=34.2412451361868, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=31.3492063492063, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI1788381, Length=565, Percent_Identity=26.0176991150442, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI87082096, Length=451, Percent_Identity=24.6119733924612, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788849, Length=255, Percent_Identity=29.0196078431373, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI87081977, Length=170, Percent_Identity=34.1176470588235, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=35.3658536585366, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=34.9397590361446, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=32.3529411764706, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1786584, Length=201, Percent_Identity=27.8606965174129, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=38.2165605095541, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081881, Length=212, Percent_Identity=30.188679245283, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=32.5301204819277, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=32.1637426900585, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=206, Percent_Identity=29.126213592233, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI87081974, Length=92, Percent_Identity=38.0434782608696, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 77777; Mature: 77777

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTNTNFPINSGYLCLTMVIFNACIGLFCLLGLPAQSSTLPLTILLPLANIIVFGVIFSR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
FYNQHKHACTLSEAPLNTNELSLKVDHKTAQLNQLRKTELSARTVSKNVQLEVEVEQAQT
HHHCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
IMTLKDDLQLLSAILDSTAVAIYAVDNKGLCIFANPQCALLLGYSHPSQLLKSNMQQLVN
HHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHH
QRAESPNTESSIQDLENIKEDIFWKADGSSFPVEYNSQPLTLNSHVNGAVISFYDNSERR
HHCCCCCCHHHHHHHHHHHHHCEEEECCCCCCEEECCCCEEEECCCCCEEEEEECCCHHH
EAEELIRRQAHYDTLTDLPNRFLALKRLEQLVESSERSGKMLAVIFLDLDDFKKINDSLG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHC
HEAGDLLLITASERLLKTTRAEDTVGRLGGDEFIILLDGLSSANDAQPIAENLIGGFRKP
CCCCCEEEEECCHHHHHHHCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCC
FYIDNRQLILTASIGIAIYPNDGETPSELLRNADSAMYHTKSIGRNTYSYFTHAMNKEVS
EEECCCEEEEEEECEEEEECCCCCCHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
RRLAIEEQIHGALERGEIRVHYQIQLDIRDGSIMGAEALLRWNNPTLGSVSPAEFIPIAE
HHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEECCHHEEEECCCCCCCCCHHHEECCHH
QTGMIEPMGEFVLQQALETAHIWQRKFNDKFRVAINLSPRQFRNPKLVQTIIDKVEKLGM
HCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCHHHHHHHHHHHHHCC
HPSDLELEITEGVLLSGHAYTLGALMQLSEAGFYISMDDFGTGYSSLSYLKTYPFTILKI
CCCCCEEEEECCEEECCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEEEEEE
DRSFIHDMNKDDKSNDLIIATIEMAHALGIRVIAEGVETQEQLDELSFMMCDYAQGFLIS
CHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEC
KPVPLKELLKIGSRYRKMHEQNTFQGESEALNIV
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKTNTNFPINSGYLCLTMVIFNACIGLFCLLGLPAQSSTLPLTILLPLANIIVFGVIFSR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
FYNQHKHACTLSEAPLNTNELSLKVDHKTAQLNQLRKTELSARTVSKNVQLEVEVEQAQT
HHHCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
IMTLKDDLQLLSAILDSTAVAIYAVDNKGLCIFANPQCALLLGYSHPSQLLKSNMQQLVN
HHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHH
QRAESPNTESSIQDLENIKEDIFWKADGSSFPVEYNSQPLTLNSHVNGAVISFYDNSERR
HHCCCCCCHHHHHHHHHHHHHCEEEECCCCCCEEECCCCEEEECCCCCEEEEEECCCHHH
EAEELIRRQAHYDTLTDLPNRFLALKRLEQLVESSERSGKMLAVIFLDLDDFKKINDSLG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHC
HEAGDLLLITASERLLKTTRAEDTVGRLGGDEFIILLDGLSSANDAQPIAENLIGGFRKP
CCCCCEEEEECCHHHHHHHCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCC
FYIDNRQLILTASIGIAIYPNDGETPSELLRNADSAMYHTKSIGRNTYSYFTHAMNKEVS
EEECCCEEEEEEECEEEEECCCCCCHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
RRLAIEEQIHGALERGEIRVHYQIQLDIRDGSIMGAEALLRWNNPTLGSVSPAEFIPIAE
HHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEECCHHEEEECCCCCCCCCHHHEECCHH
QTGMIEPMGEFVLQQALETAHIWQRKFNDKFRVAINLSPRQFRNPKLVQTIIDKVEKLGM
HCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCHHHHHHHHHHHHHCC
HPSDLELEITEGVLLSGHAYTLGALMQLSEAGFYISMDDFGTGYSSLSYLKTYPFTILKI
CCCCCEEEEECCEEECCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEEEEEE
DRSFIHDMNKDDKSNDLIIATIEMAHALGIRVIAEGVETQEQLDELSFMMCDYAQGFLIS
CHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEC
KPVPLKELLKIGSRYRKMHEQNTFQGESEALNIV
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]