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The map label for this gene is ybbK [C]

Identifier: 167622479

GI number: 167622479

Start: 648178

End: 649116

Strand: Direct

Name: ybbK [C]

Synonym: Shal_0539

Alternate gene names: 167622479

Gene position: 648178-649116 (Clockwise)

Preceding gene: 167622478

Following gene: 167622480

Centisome position: 12.4

GC content: 46.75

Gene sequence:

>939_bases
ATGATGATTGCAGGAATTGATACCGATCTAATTGTAATGGGCATTTGGGGCCTTATCTTTGCCATCTTTGTGGTTAAGCT
ATTTCAATCGATTCGCTTAGTGCCTACAAAGTCGGCCTATATCGTGGAGCGTTTAGGTAAATATCACTCAACCTTGGATG
CGGGCTTTCACGCTTTAGTGCCATTCGTCGATAAAGTGGCTTATATACACGATCTAAAAGAAGAGACGATTGATGTGCCA
CCCCAGGAGTGCTTCTCATGTGATGAAGTGAATGTAGAAGTTGATGGGGTTATCTATATTTCAGTGGTTGACCCAGTAAA
AGCCAGTTACGGCGTTACCGATTACCGTTATGCGGCGATTCAGTTAGCGCAAACCACCACGCGCAGCGTGATTGGTACCC
TAGATCTAGACCGTACCTTTGAAGAGCGTGACGTGATTAGCGCCAAAGTGGTTGAAGTGCTGGATCAAGCGGGTGCACTG
TGGGGTATTCGAGTACACCGTTATGAAATTAAAAATATTACTCCGCCTGAAACGGTTAAAAATGCCATGGAGATGCAGGT
CAATGCCGAGCGAGAACGGCGTGCATTACTGGCCAAGAGTGAAGGTGATAAGCAGAGTAAGATTAATCGCTCTGAAGGTA
TCAAAGCGGAAACCATTAACCACTCAGAAGGTGAGATGCAGCGCCGAATTAACGAGGCTGAAGGTAAGGGGGAGGAGATC
TTAACCATTGCACGAGCCACGGCAGAGTCGATTGAGCGTATGGCCACCGTTATTGCGGCGCCAGGCGGAAAAAACGTGGT
GCGTATGCAGTTAGGTGCGCAATACCTTAAACAGCTCGATGGCGTCAGCTCTGGCCAAAGTAAGGTTATTTTACCCGGAA
ATATGATGGACTTTGACCACTGGATGAATAGTATCGGACTAGAAGAGACTCCTAAATAA

Upstream 100 bases:

>100_bases
CTGTTGTACCAGCAGAACTGGCCAAGATTGAGGGATTCTTCGAAGGCATGGAACAGGTCACTAACGCAGTGTCAGCCAAC
TCAGTTAAGGGAGCACGCTA

Downstream 100 bases:

>100_bases
CAGTCTGAACTATTGCTAAACATGCTAGCTTCTAAAATGGGAGTTAGCATTTTTTATGGGTGACAGGTACCAATCGGTCG
TTTCATAAGGAAAGGCACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MMIAGIDTDLIVMGIWGLIFAIFVVKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHALVPFVDKVAYIHDLKEETIDVP
PQECFSCDEVNVEVDGVIYISVVDPVKASYGVTDYRYAAIQLAQTTTRSVIGTLDLDRTFEERDVISAKVVEVLDQAGAL
WGIRVHRYEIKNITPPETVKNAMEMQVNAERERRALLAKSEGDKQSKINRSEGIKAETINHSEGEMQRRINEAEGKGEEI
LTIARATAESIERMATVIAAPGGKNVVRMQLGAQYLKQLDGVSSGQSKVILPGNMMDFDHWMNSIGLEETPK

Sequences:

>Translated_312_residues
MMIAGIDTDLIVMGIWGLIFAIFVVKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHALVPFVDKVAYIHDLKEETIDVP
PQECFSCDEVNVEVDGVIYISVVDPVKASYGVTDYRYAAIQLAQTTTRSVIGTLDLDRTFEERDVISAKVVEVLDQAGAL
WGIRVHRYEIKNITPPETVKNAMEMQVNAERERRALLAKSEGDKQSKINRSEGIKAETINHSEGEMQRRINEAEGKGEEI
LTIARATAESIERMATVIAAPGGKNVVRMQLGAQYLKQLDGVSSGQSKVILPGNMMDFDHWMNSIGLEETPK
>Mature_312_residues
MMIAGIDTDLIVMGIWGLIFAIFVVKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHALVPFVDKVAYIHDLKEETIDVP
PQECFSCDEVNVEVDGVIYISVVDPVKASYGVTDYRYAAIQLAQTTTRSVIGTLDLDRTFEERDVISAKVVEVLDQAGAL
WGIRVHRYEIKNITPPETVKNAMEMQVNAERERRALLAKSEGDKQSKINRSEGIKAETINHSEGEMQRRINEAEGKGEEI
LTIARATAESIERMATVIAAPGGKNVVRMQLGAQYLKQLDGVSSGQSKVILPGNMMDFDHWMNSIGLEETPK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=265, Percent_Identity=41.5094339622642, Blast_Score=217, Evalue=1e-56,
Organism=Homo sapiens, GI221316744, Length=211, Percent_Identity=31.2796208530806, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI21686995, Length=211, Percent_Identity=31.2796208530806, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI38016911, Length=220, Percent_Identity=30.4545454545455, Blast_Score=89, Evalue=7e-18,
Organism=Escherichia coli, GI1786697, Length=275, Percent_Identity=34.1818181818182, Blast_Score=174, Evalue=9e-45,
Organism=Caenorhabditis elegans, GI32564147, Length=270, Percent_Identity=39.2592592592593, Blast_Score=223, Evalue=8e-59,
Organism=Caenorhabditis elegans, GI17569493, Length=227, Percent_Identity=33.0396475770925, Blast_Score=114, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI193209764, Length=227, Percent_Identity=33.0396475770925, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71989948, Length=218, Percent_Identity=34.4036697247706, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71989955, Length=170, Percent_Identity=36.4705882352941, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17569497, Length=190, Percent_Identity=31.5789473684211, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI193210507, Length=216, Percent_Identity=30.5555555555556, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17570161, Length=216, Percent_Identity=30.5555555555556, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32566490, Length=222, Percent_Identity=29.2792792792793, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17569499, Length=222, Percent_Identity=30.6306306306306, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71987612, Length=216, Percent_Identity=31.4814814814815, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI25153583, Length=214, Percent_Identity=31.7757009345794, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71987621, Length=216, Percent_Identity=31.4814814814815, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17570459, Length=222, Percent_Identity=28.3783783783784, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71989963, Length=135, Percent_Identity=36.2962962962963, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI45550506, Length=272, Percent_Identity=39.7058823529412, Blast_Score=215, Evalue=4e-56,
Organism=Drosophila melanogaster, GI45556022, Length=209, Percent_Identity=34.9282296650718, Blast_Score=101, Evalue=8e-22,
Organism=Drosophila melanogaster, GI18860517, Length=214, Percent_Identity=32.2429906542056, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28573263, Length=191, Percent_Identity=31.413612565445, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI21356845, Length=191, Percent_Identity=25.130890052356, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281365664, Length=222, Percent_Identity=32.4324324324324, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI281361631, Length=200, Percent_Identity=27, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281361633, Length=200, Percent_Identity=27, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI62484448, Length=222, Percent_Identity=31.981981981982, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI62484274, Length=222, Percent_Identity=31.981981981982, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24657857, Length=222, Percent_Identity=31.981981981982, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI281361635, Length=137, Percent_Identity=27.007299270073, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 34686; Mature: 34686

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIAGIDTDLIVMGIWGLIFAIFVVKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHALV
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PFVDKVAYIHDLKEETIDVPPQECFSCDEVNVEVDGVIYISVVDPVKASYGVTDYRYAAI
HHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEECCEEEEEEECCHHHHCCCCHHHHHHH
QLAQTTTRSVIGTLDLDRTFEERDVISAKVVEVLDQAGALWGIRVHRYEIKNITPPETVK
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHH
NAMEMQVNAERERRALLAKSEGDKQSKINRSEGIKAETINHSEGEMQRRINEAEGKGEEI
HHHHHHHCHHHHHHHHHHCCCCCHHHHCCHHCCCEEEECCCCHHHHHHHHHHHCCCCCHH
LTIARATAESIERMATVIAAPGGKNVVRMQLGAQYLKQLDGVSSGQSKVILPGNMMDFDH
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHH
WMNSIGLEETPK
HHHHCCCCCCCC
>Mature Secondary Structure
MMIAGIDTDLIVMGIWGLIFAIFVVKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHALV
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PFVDKVAYIHDLKEETIDVPPQECFSCDEVNVEVDGVIYISVVDPVKASYGVTDYRYAAI
HHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEECCEEEEEEECCHHHHCCCCHHHHHHH
QLAQTTTRSVIGTLDLDRTFEERDVISAKVVEVLDQAGALWGIRVHRYEIKNITPPETVK
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHH
NAMEMQVNAERERRALLAKSEGDKQSKINRSEGIKAETINHSEGEMQRRINEAEGKGEEI
HHHHHHHCHHHHHHHHHHCCCCCHHHHCCHHCCCEEEECCCCHHHHHHHHHHHCCCCCHH
LTIARATAESIERMATVIAAPGGKNVVRMQLGAQYLKQLDGVSSGQSKVILPGNMMDFDH
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHH
WMNSIGLEETPK
HHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]