| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622477
Identifier: 167622477
GI number: 167622477
Start: 646741
End: 647220
Strand: Direct
Name: 167622477
Synonym: Shal_0537
Alternate gene names: NA
Gene position: 646741-647220 (Clockwise)
Preceding gene: 167622475
Following gene: 167622478
Centisome position: 12.37
GC content: 46.67
Gene sequence:
>480_bases ATGGAGTTTTCAAATCCCATTCTAATCTGGGTATGTATCGGCATTTTTCTTATGCTGACAGAGATCATTTTACCGGGTGG TATAGTGATCCTCATAGGTGCGGCTTGCTTGGTTGTCGCAGGCGCCTTGGCTATAGGTTTAGTCGAAGGCATAGTGCAAA GCTTAACGCTTTGGTTTATTGCCGCTATGGTTCTTTTACTGGTTTTTCGCCAGATCACACAAAAGTTGGTTGGCGGAGAC GCCCACATCGACAATACCGATGAAGAGTTGGATATTTACGATCAGCTCGCTACTGTCAAACAAACTATTGGCCCGGCACA ACAGATGGGGCGAGTCGAGTTTCAGGGCTGTGAATGGTCTGCACTGGGAGATGGTAGCGAGATAGCTGCTGGCTCTGTAG TTCGGATTATCTGCAGAGATAATATTGCGTTAGTGGTTGAGCCTATAAAGGCTGAAGATGAGCACTGCGCAGAAAAGTAA
Upstream 100 bases:
>100_bases GTTACAGTCCTTAGATAGAGGCTTGTTGACATAATATGTCGCACAAAACTTGTGCAGCTGATATAGTCATTGTTAGGCTC TTTCATTTTTTGGGGGAAAT
Downstream 100 bases:
>100_bases TGGGTTTTAGTCAGGAAAGGATCTCTCTATGTTTGCATTTACACTCTTTGTTTTATTCGTCTTTTTTATTCTCTATAAAT TGCTGCTAATTGTACCTATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 159
Protein sequence:
>159_residues MEFSNPILIWVCIGIFLMLTEIILPGGIVILIGAACLVVAGALAIGLVEGIVQSLTLWFIAAMVLLLVFRQITQKLVGGD AHIDNTDEELDIYDQLATVKQTIGPAQQMGRVEFQGCEWSALGDGSEIAAGSVVRIICRDNIALVVEPIKAEDEHCAEK
Sequences:
>Translated_159_residues MEFSNPILIWVCIGIFLMLTEIILPGGIVILIGAACLVVAGALAIGLVEGIVQSLTLWFIAAMVLLLVFRQITQKLVGGD AHIDNTDEELDIYDQLATVKQTIGPAQQMGRVEFQGCEWSALGDGSEIAAGSVVRIICRDNIALVVEPIKAEDEHCAEK >Mature_159_residues MEFSNPILIWVCIGIFLMLTEIILPGGIVILIGAACLVVAGALAIGLVEGIVQSLTLWFIAAMVLLLVFRQITQKLVGGD AHIDNTDEELDIYDQLATVKQTIGPAQQMGRVEFQGCEWSALGDGSEIAAGSVVRIICRDNIALVVEPIKAEDEHCAEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17089; Mature: 17089
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFSNPILIWVCIGIFLMLTEIILPGGIVILIGAACLVVAGALAIGLVEGIVQSLTLWFI CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAMVLLLVFRQITQKLVGGDAHIDNTDEELDIYDQLATVKQTIGPAQQMGRVEFQGCEWS HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCEECCCCCC ALGDGSEIAAGSVVRIICRDNIALVVEPIKAEDEHCAEK CCCCCCCHHHHHHHHEEECCCEEEEEECCCCCCCCCCCC >Mature Secondary Structure MEFSNPILIWVCIGIFLMLTEIILPGGIVILIGAACLVVAGALAIGLVEGIVQSLTLWFI CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAMVLLLVFRQITQKLVGGDAHIDNTDEELDIYDQLATVKQTIGPAQQMGRVEFQGCEWS HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCEECCCCCC ALGDGSEIAAGSVVRIICRDNIALVVEPIKAEDEHCAEK CCCCCCCHHHHHHHHEEECCCEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA