| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622299
Identifier: 167622299
GI number: 167622299
Start: 425302
End: 425949
Strand: Reverse
Name: 167622299
Synonym: Shal_0358
Alternate gene names: NA
Gene position: 425949-425302 (Counterclockwise)
Preceding gene: 167622300
Following gene: 167622298
Centisome position: 8.15
GC content: 46.45
Gene sequence:
>648_bases ATGAAAAAACTAATCACCACAACGATTCTTGGCACTAGCCTGCTACTGGGTGGCTGCCAGAGTGCTTATTACGGTGCCAT GGAGAAAGTCGGTTATCACAAGCGCGATATCATGGTTGACCGTGTCGAAGATGCTAAAGAATCTCAAGAGGAGGCGCAGG AGCAGTTCAGCTCGGCGCTTGAAGAGATGCAGGCACTGCTTAACCACGATGGTGGTGATTTAGAAAGTGCCTATAACAAG GCCAAAGACGAATATGAGTCGGCACAAGACGCGGCCGATGATGTCACTAATCGTATCGACAAGGTAGAAGATGTTGCCGA AGCGCTATTTGACGAGTGGCAAACCGAGATCGGTGAGATCAGCAAAGCCAGTCTACGTCGTAACAGCGAAAGCAAGCTAA GAGAAACTGAGCGTTCATACACTCAATTGGTTAAGAGTATGCGCCGCGCCGAGAGCAAGATGGAACCAGTACTCGTCGCA ATGAAAGATAATATGCTGTATTTAAAGCATAACCTTAATGCCCAAGCCATTGGCGCCATTAAAGGCGAGTTTGCTAGCCT ACAGACTGATATCTCTGGTCTAATTAAAGAGATGAACAAGTCGATTAATGAATCGAACAAGTTTATTGCCTCGCTCGAAG GTAAATAA
Upstream 100 bases:
>100_bases ATATTTTTAATTATCGCAATACCTTTACACATTTGGTGCATTGTTGACGCAGCTAGATACCGCTCGTAGTCACTCACCGA ATTTTCAGGGATAAAAGAAG
Downstream 100 bases:
>100_bases GTAATGACTAAAGTTTGGTTCCTAGGTATGAACTCTTAGGAACCAAACTTGTGAGCTAGTGCGATATTTTCAACGCTCAA ATCTTAATTTTTAGATCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; ATPase; Glutamine Synthetase
Number of amino acids: Translated: 215; Mature: 215
Protein sequence:
>215_residues MKKLITTTILGTSLLLGGCQSAYYGAMEKVGYHKRDIMVDRVEDAKESQEEAQEQFSSALEEMQALLNHDGGDLESAYNK AKDEYESAQDAADDVTNRIDKVEDVAEALFDEWQTEIGEISKASLRRNSESKLRETERSYTQLVKSMRRAESKMEPVLVA MKDNMLYLKHNLNAQAIGAIKGEFASLQTDISGLIKEMNKSINESNKFIASLEGK
Sequences:
>Translated_215_residues MKKLITTTILGTSLLLGGCQSAYYGAMEKVGYHKRDIMVDRVEDAKESQEEAQEQFSSALEEMQALLNHDGGDLESAYNK AKDEYESAQDAADDVTNRIDKVEDVAEALFDEWQTEIGEISKASLRRNSESKLRETERSYTQLVKSMRRAESKMEPVLVA MKDNMLYLKHNLNAQAIGAIKGEFASLQTDISGLIKEMNKSINESNKFIASLEGK >Mature_215_residues MKKLITTTILGTSLLLGGCQSAYYGAMEKVGYHKRDIMVDRVEDAKESQEEAQEQFSSALEEMQALLNHDGGDLESAYNK AKDEYESAQDAADDVTNRIDKVEDVAEALFDEWQTEIGEISKASLRRNSESKLRETERSYTQLVKSMRRAESKMEPVLVA MKDNMLYLKHNLNAQAIGAIKGEFASLQTDISGLIKEMNKSINESNKFIASLEGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24085; Mature: 24085
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLITTTILGTSLLLGGCQSAYYGAMEKVGYHKRDIMVDRVEDAKESQEEAQEQFSSAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEMQALLNHDGGDLESAYNKAKDEYESAQDAADDVTNRIDKVEDVAEALFDEWQTEIGEI HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKASLRRNSESKLRETERSYTQLVKSMRRAESKMEPVLVAMKDNMLYLKHNLNAQAIGAI HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCHHHHHHH KGEFASLQTDISGLIKEMNKSINESNKFIASLEGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKKLITTTILGTSLLLGGCQSAYYGAMEKVGYHKRDIMVDRVEDAKESQEEAQEQFSSAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEMQALLNHDGGDLESAYNKAKDEYESAQDAADDVTNRIDKVEDVAEALFDEWQTEIGEI HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKASLRRNSESKLRETERSYTQLVKSMRRAESKMEPVLVAMKDNMLYLKHNLNAQAIGAI HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCHHHHHHH KGEFASLQTDISGLIKEMNKSINESNKFIASLEGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA