| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is ina [H]
Identifier: 167622035
GI number: 167622035
Start: 104985
End: 107789
Strand: Direct
Name: ina [H]
Synonym: Shal_0094
Alternate gene names: 167622035
Gene position: 104985-107789 (Clockwise)
Preceding gene: 167622034
Following gene: 167622037
Centisome position: 2.01
GC content: 46.1
Gene sequence:
>2805_bases ATGAATAAACTTCTTAAAATTAAATTGTTAGCGGCATTTTTTGCAGCAATAATTTCATTCTCTCCTATTGCTCTCGCAGT ACCTGTGACATCTGGTACCACGGCTGATGCCAACATGATTAACAAAGAGCGGGTTTTATATTGGCTGGTTAAACGCGGTG AGTTATCAGCTAACGCAACAGAAGCTGAAAAGCAGCAAGCGATAGCTGATTTTACTAAACGCGCCTATGGAAACAAAAAA ATCCCACTGATCCAAGCACAACAACAAATTAAGCGACTCGAGCGTGCTAAGCAGCGGGCAAAGTCAGCAAACTATTCATC ACCTTTAGTGAAGAGCTTTAATAATAAAACGGTCAAAGTGCTTACCGTGCTTATCGACTTTCCAGACTTACGCCACGATG ATAATGGCTTAAGCAGTAGCGATACGCAGATGTTTTATAACAGCTATTCGCCAGAACATTTCAAATCACTGCTGTTTTCA AAGACAGGATATGAGGGGCCGCAAGGGCAAACCTTGATGACAGGGTATCAATATTATCAGGCTGAATCGGGTGGAAGTTT CTTCTTTACCGGTGATGTTAAGGGCTGGTATCGCGCGACAAGCAATGCAGCTGCTTATGGAGGCAATGACCCCGATGACG ATGATAACGACATTGGTGTTTCTGAGTTGGTGAAAGAGGCCGTTACTGAGGCCGTTGCAGGTATGAGCGCGCCTGAATTG GCCAGTTATGATATTGAAGACCCTTATGATTTAAATAATAATGGTTTAACAAATGAAGCCGATGGCATTATCGATCATGT GATGATCTTCCATTCGAGTATTGGTGAAGAAGCGGGGGGCGGTATGTTGGGTAGTGATGCTATCTGGTCCCATCGATCCT TTGTCGATGGTGGTAGCTATACGCTGCCGGGGACTGAGATAAAGCTTTCGGGCTATACCATTCAACCGATAGATGCTGCA TTGGGAGTCTGTGTACACGAGTTTGGCCATGATCTGGGCCTGCCCGATGAATACGATACCACTCAGTTGGGCAAAGGCGC TCCGGTAGGGTTTTGGTCAGTTATGGCGGGTGGTAGTTGGGCTGGCTCACTTGCAGGCTCCTTGCCTTCAGGCTTTAGTC CGTATGCCCGTTCCTATTTGCAGACTATCTATGGAGGCAATTGGGTCACTGAGCAAAGTGTAGCGCTCGATTCTATTTCG GCTTCAGGGCTAGATATTAATCTTGTTGAAGCTATCAACCATGATCAGGTGAACCAGCTTTCTATTGCTGTTCCCGCTGT CGATATTGAGTTTAAGGAACCTTATAGCGGAGCGTTTCAGTACTACTCAGATCAAGGCGATATGATTAACCATGCTATGT CATTTGATGTTGACTTACCGGCGGCAACTCCGCTTAGCTTAACCATGCTGGCACATTGGAGTATCGAGCTGGATTATGAT TATGCTCAGTTGATGGTCGACGGTATAGCGATAATGGGAAATCATACCAAGTCGAGTAACTCGATTAATAACGAACGCAA TATCATCACAGGTCAGTCTAGTGATTTGGCGGAAGCCGAAGGTGCAAATGCTTGGGTTGATCTTCAGTTTGATTTAAGCC CTTATGCAGGCCGAAGTGTACGTATATCGATCCGTTACGTGACCGATCAGGCTGTAGGTGATTATGGCATAGTGCTTGAC GATATCGCTATTAAACAGTCGACCGAAACCGTGCTTTTCGATGGTGCAGAGCAAGAGACTGACATTGCATATGCGGGGTT TGCTCGGGTAGGCAGCAAGCGTCCAGGTAAAGATCGGCGCTATATCGTTCAGCTAAGAAGCCAACAAGGTGTAGATAAAG GACTTAAGTCTGAATCTTATGATCCTGGGATCGTACTGTGGTTTGAAAACCAGGAGTACATCAACAATGAAGTAAACAGC CATCCAGGTTATAGCTTAATTAGCGTGGTAGATGCAGACCAAAACTTAATCGGTAGTAATGACTCTAGTGTTCAGGTGAG AGATGCAGCTTTCAGCCTATTTAACCAATCGAGCTACTTTAACGATAATCACCTTAGTGCGGTTAAGTTATTCGATGATG GCAATGATTTCAGTGCGCCGCTACAGAAAGAGTCTGGTACCATTTTGCCTGAACTTGGCTTAACCATGGAGGTGATGACC CAATCTAGCAATAGCAGTAATGCGATGGTGCAGTTTCGGTATACCAGCCAGACGCCCCCAGAATTACAAGAGCTGAATGC AAGTATCAGTTATAGCTTACAAGGTCGAGAAGCTAGCTTCTCTGCCAATGCTAGCGGCGGTGATGGCAATTATACCTACA CATGGGACTTTGGTACTACAGATGGTACGAGCCGTGAGGCCTCCCCAAGCTACACCTACGCTACCGATGGTAATTACTTA GTTTCCCTTACCGTGACCGATGGTGATGGCGCTAGTGTTACTAATAACACCACTCTTGTTGTGGGATCGGTGATTGAGGT GAATTTTACTCAAACTACGTCAAATCTAATGGTGAGCTTTGCCAATCAGTCGACAGGTGGCAGCGGTGAGCTGAGCTACC TGTGGGAGTTTGGTGATGGTAATACTAGTTCTGCAGCATCTCCAAGTTATACCTATGGCGCGACGGGCAGTTATACGGTG ATGCTAACAGTGACGGACAGTATGGGGCAAACAGCACAAAAGAGTGCGTTAATAACGGTGACTGCTGCGGTTATTGAGCG CAGTGGCTCTTCTGGAGGTAGCTTAGGCTGGCTGTCGCTTGTTATGCTCGGCCTATTCAGCTTATATCGGCGTCAAGCCT CATAG
Upstream 100 bases:
>100_bases ACCGAACAGATGACTGAAGCCGAAGCTGAGCAAATTGTTGTTGAATATATTCGCAAGCGTCAGAAAGCGTTCCAAGACTG TAAAAAAGGAAGTCAGTAGT
Downstream 100 bases:
>100_bases ACATAACTCGCCGCATGAAGTGCCCTAGTTAGGGCGTTTTTTATTTTTTGCTATGCAGCTAGAGCTTCGCGATGGCTTCT TGTGCAGCGGGTAAGAAAAC
Product: peptidase M6 immune inhibitor A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 934; Mature: 934
Protein sequence:
>934_residues MNKLLKIKLLAAFFAAIISFSPIALAVPVTSGTTADANMINKERVLYWLVKRGELSANATEAEKQQAIADFTKRAYGNKK IPLIQAQQQIKRLERAKQRAKSANYSSPLVKSFNNKTVKVLTVLIDFPDLRHDDNGLSSSDTQMFYNSYSPEHFKSLLFS KTGYEGPQGQTLMTGYQYYQAESGGSFFFTGDVKGWYRATSNAAAYGGNDPDDDDNDIGVSELVKEAVTEAVAGMSAPEL ASYDIEDPYDLNNNGLTNEADGIIDHVMIFHSSIGEEAGGGMLGSDAIWSHRSFVDGGSYTLPGTEIKLSGYTIQPIDAA LGVCVHEFGHDLGLPDEYDTTQLGKGAPVGFWSVMAGGSWAGSLAGSLPSGFSPYARSYLQTIYGGNWVTEQSVALDSIS ASGLDINLVEAINHDQVNQLSIAVPAVDIEFKEPYSGAFQYYSDQGDMINHAMSFDVDLPAATPLSLTMLAHWSIELDYD YAQLMVDGIAIMGNHTKSSNSINNERNIITGQSSDLAEAEGANAWVDLQFDLSPYAGRSVRISIRYVTDQAVGDYGIVLD DIAIKQSTETVLFDGAEQETDIAYAGFARVGSKRPGKDRRYIVQLRSQQGVDKGLKSESYDPGIVLWFENQEYINNEVNS HPGYSLISVVDADQNLIGSNDSSVQVRDAAFSLFNQSSYFNDNHLSAVKLFDDGNDFSAPLQKESGTILPELGLTMEVMT QSSNSSNAMVQFRYTSQTPPELQELNASISYSLQGREASFSANASGGDGNYTYTWDFGTTDGTSREASPSYTYATDGNYL VSLTVTDGDGASVTNNTTLVVGSVIEVNFTQTTSNLMVSFANQSTGGSGELSYLWEFGDGNTSSAASPSYTYGATGSYTV MLTVTDSMGQTAQKSALITVTAAVIERSGSSGGSLGWLSLVMLGLFSLYRRQAS
Sequences:
>Translated_934_residues MNKLLKIKLLAAFFAAIISFSPIALAVPVTSGTTADANMINKERVLYWLVKRGELSANATEAEKQQAIADFTKRAYGNKK IPLIQAQQQIKRLERAKQRAKSANYSSPLVKSFNNKTVKVLTVLIDFPDLRHDDNGLSSSDTQMFYNSYSPEHFKSLLFS KTGYEGPQGQTLMTGYQYYQAESGGSFFFTGDVKGWYRATSNAAAYGGNDPDDDDNDIGVSELVKEAVTEAVAGMSAPEL ASYDIEDPYDLNNNGLTNEADGIIDHVMIFHSSIGEEAGGGMLGSDAIWSHRSFVDGGSYTLPGTEIKLSGYTIQPIDAA LGVCVHEFGHDLGLPDEYDTTQLGKGAPVGFWSVMAGGSWAGSLAGSLPSGFSPYARSYLQTIYGGNWVTEQSVALDSIS ASGLDINLVEAINHDQVNQLSIAVPAVDIEFKEPYSGAFQYYSDQGDMINHAMSFDVDLPAATPLSLTMLAHWSIELDYD YAQLMVDGIAIMGNHTKSSNSINNERNIITGQSSDLAEAEGANAWVDLQFDLSPYAGRSVRISIRYVTDQAVGDYGIVLD DIAIKQSTETVLFDGAEQETDIAYAGFARVGSKRPGKDRRYIVQLRSQQGVDKGLKSESYDPGIVLWFENQEYINNEVNS HPGYSLISVVDADQNLIGSNDSSVQVRDAAFSLFNQSSYFNDNHLSAVKLFDDGNDFSAPLQKESGTILPELGLTMEVMT QSSNSSNAMVQFRYTSQTPPELQELNASISYSLQGREASFSANASGGDGNYTYTWDFGTTDGTSREASPSYTYATDGNYL VSLTVTDGDGASVTNNTTLVVGSVIEVNFTQTTSNLMVSFANQSTGGSGELSYLWEFGDGNTSSAASPSYTYGATGSYTV MLTVTDSMGQTAQKSALITVTAAVIERSGSSGGSLGWLSLVMLGLFSLYRRQAS >Mature_934_residues MNKLLKIKLLAAFFAAIISFSPIALAVPVTSGTTADANMINKERVLYWLVKRGELSANATEAEKQQAIADFTKRAYGNKK IPLIQAQQQIKRLERAKQRAKSANYSSPLVKSFNNKTVKVLTVLIDFPDLRHDDNGLSSSDTQMFYNSYSPEHFKSLLFS KTGYEGPQGQTLMTGYQYYQAESGGSFFFTGDVKGWYRATSNAAAYGGNDPDDDDNDIGVSELVKEAVTEAVAGMSAPEL ASYDIEDPYDLNNNGLTNEADGIIDHVMIFHSSIGEEAGGGMLGSDAIWSHRSFVDGGSYTLPGTEIKLSGYTIQPIDAA LGVCVHEFGHDLGLPDEYDTTQLGKGAPVGFWSVMAGGSWAGSLAGSLPSGFSPYARSYLQTIYGGNWVTEQSVALDSIS ASGLDINLVEAINHDQVNQLSIAVPAVDIEFKEPYSGAFQYYSDQGDMINHAMSFDVDLPAATPLSLTMLAHWSIELDYD YAQLMVDGIAIMGNHTKSSNSINNERNIITGQSSDLAEAEGANAWVDLQFDLSPYAGRSVRISIRYVTDQAVGDYGIVLD DIAIKQSTETVLFDGAEQETDIAYAGFARVGSKRPGKDRRYIVQLRSQQGVDKGLKSESYDPGIVLWFENQEYINNEVNS HPGYSLISVVDADQNLIGSNDSSVQVRDAAFSLFNQSSYFNDNHLSAVKLFDDGNDFSAPLQKESGTILPELGLTMEVMT QSSNSSNAMVQFRYTSQTPPELQELNASISYSLQGREASFSANASGGDGNYTYTWDFGTTDGTSREASPSYTYATDGNYL VSLTVTDGDGASVTNNTTLVVGSVIEVNFTQTTSNLMVSFANQSTGGSGELSYLWEFGDGNTSSAASPSYTYGATGSYTV MLTVTDSMGQTAQKSALITVTAAVIERSGSSGGSLGWLSLVMLGLFSLYRRQAS
Specific function: Neutral metalloprotease that is secreted to degrade antibacterial proteins produced by the insect host for its defense (attacins and cecropins). Probably degrades some unknown crucial protein(s) too, since it is toxic when injected to insect larvae [H]
COG id: COG4412
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M6 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012300 - InterPro: IPR008757 [H]
Pfam domain/function: PF05547 Peptidase_M6 [H]
EC number: NA
Molecular weight: Translated: 100811; Mature: 100811
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: PS50093 PKD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKLLKIKLLAAFFAAIISFSPIALAVPVTSGTTADANMINKERVLYWLVKRGELSANAT CCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHCCCCEEEEEEEECCCCCCCCC EAEKQQAIADFTKRAYGNKKIPLIQAQQQIKRLERAKQRAKSANYSSPLVKSFNNKTVKV HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEE LTVLIDFPDLRHDDNGLSSSDTQMFYNSYSPEHFKSLLFSKTGYEGPQGQTLMTGYQYYQ EEEEECCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCCCEEEECEEEEE AESGGSFFFTGDVKGWYRATSNAAAYGGNDPDDDDNDIGVSELVKEAVTEAVAGMSAPEL ECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC ASYDIEDPYDLNNNGLTNEADGIIDHVMIFHSSIGEEAGGGMLGSDAIWSHRSFVDGGSY CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCE TLPGTEIKLSGYTIQPIDAALGVCVHEFGHDLGLPDEYDTTQLGKGAPVGFWSVMAGGSW ECCCCEEEECCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC AGSLAGSLPSGFSPYARSYLQTIYGGNWVTEQSVALDSISASGLDINLVEAINHDQVNQL HHHHCCCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHCCCCCCCCEEEEECCCCCCCCEE SIAVPAVDIEFKEPYSGAFQYYSDQGDMINHAMSFDVDLPAATPLSLTMLAHWSIELDYD EEEEEEEEEEECCCCCCCCEEECCCCCHHHHHEEECCCCCCCCCCEEEEEEEEEEEECCH YAQLMVDGIAIMGNHTKSSNSINNERNIITGQSSDLAEAEGANAWVDLQFDLSPYAGRSV HHHHHHHCEEEEECCCCCCCCCCCCCCEEECCCCCCHHCCCCCEEEEEEEECCCCCCCEE RISIRYVTDQAVGDYGIVLDDIAIKQSTETVLFDGAEQETDIAYAGFARVGSKRPGKDRR EEEEEEEECCCCCCCCEEEECEEECCCCCEEEECCCCCCCCEEEEHHHHHCCCCCCCCCE YIVQLRSQQGVDKGLKSESYDPGIVLWFENQEYINNEVNSHPGYSLISVVDADQNLIGSN EEEEEHHHCCHHHCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCEEEEEEECCCCCCCCC DSSVQVRDAAFSLFNQSSYFNDNHLSAVKLFDDGNDFSAPLQKESGTILPELGLTMEVMT CCCEEEHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE QSSNSSNAMVQFRYTSQTPPELQELNASISYSLQGREASFSANASGGDGNYTYTWDFGTT CCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC DGTSREASPSYTYATDGNYLVSLTVTDGDGASVTNNTTLVVGSVIEVNFTQTTSNLMVSF CCCCCCCCCCEEEEECCCEEEEEEEECCCCCEECCCCEEEEEEEEEEEEEEECCEEEEEE ANQSTGGSGELSYLWEFGDGNTSSAASPSYTYGATGSYTVMLTVTDSMGQTAQKSALITV ECCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCHHHCCEEEEE TAAVIERSGSSGGSLGWLSLVMLGLFSLYRRQAS EEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNKLLKIKLLAAFFAAIISFSPIALAVPVTSGTTADANMINKERVLYWLVKRGELSANAT CCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHCCCCEEEEEEEECCCCCCCCC EAEKQQAIADFTKRAYGNKKIPLIQAQQQIKRLERAKQRAKSANYSSPLVKSFNNKTVKV HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEE LTVLIDFPDLRHDDNGLSSSDTQMFYNSYSPEHFKSLLFSKTGYEGPQGQTLMTGYQYYQ EEEEECCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCCCEEEECEEEEE AESGGSFFFTGDVKGWYRATSNAAAYGGNDPDDDDNDIGVSELVKEAVTEAVAGMSAPEL ECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC ASYDIEDPYDLNNNGLTNEADGIIDHVMIFHSSIGEEAGGGMLGSDAIWSHRSFVDGGSY CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCE TLPGTEIKLSGYTIQPIDAALGVCVHEFGHDLGLPDEYDTTQLGKGAPVGFWSVMAGGSW ECCCCEEEECCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC AGSLAGSLPSGFSPYARSYLQTIYGGNWVTEQSVALDSISASGLDINLVEAINHDQVNQL HHHHCCCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHCCCCCCCCEEEEECCCCCCCCEE SIAVPAVDIEFKEPYSGAFQYYSDQGDMINHAMSFDVDLPAATPLSLTMLAHWSIELDYD EEEEEEEEEEECCCCCCCCEEECCCCCHHHHHEEECCCCCCCCCCEEEEEEEEEEEECCH YAQLMVDGIAIMGNHTKSSNSINNERNIITGQSSDLAEAEGANAWVDLQFDLSPYAGRSV HHHHHHHCEEEEECCCCCCCCCCCCCCEEECCCCCCHHCCCCCEEEEEEEECCCCCCCEE RISIRYVTDQAVGDYGIVLDDIAIKQSTETVLFDGAEQETDIAYAGFARVGSKRPGKDRR EEEEEEEECCCCCCCCEEEECEEECCCCCEEEECCCCCCCCEEEEHHHHHCCCCCCCCCE YIVQLRSQQGVDKGLKSESYDPGIVLWFENQEYINNEVNSHPGYSLISVVDADQNLIGSN EEEEEHHHCCHHHCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCEEEEEEECCCCCCCCC DSSVQVRDAAFSLFNQSSYFNDNHLSAVKLFDDGNDFSAPLQKESGTILPELGLTMEVMT CCCEEEHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE QSSNSSNAMVQFRYTSQTPPELQELNASISYSLQGREASFSANASGGDGNYTYTWDFGTT CCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC DGTSREASPSYTYATDGNYLVSLTVTDGDGASVTNNTTLVVGSVIEVNFTQTTSNLMVSF CCCCCCCCCCEEEEECCCEEEEEEEECCCCCEECCCCEEEEEEEEEEEEEEECCEEEEEE ANQSTGGSGELSYLWEFGDGNTSSAASPSYTYGATGSYTVMLTVTDSMGQTAQKSALITV ECCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCHHHCCEEEEE TAAVIERSGSSGGSLGWLSLVMLGLFSLYRRQAS EEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2089225; 6421577 [H]