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The map label for this gene is xseB

Identifier: 16753054

GI number: 16753054

Start: 853280

End: 853507

Strand: Direct

Name: xseB

Synonym: CP0788

Alternate gene names: 16753054

Gene position: 853280-853507 (Clockwise)

Preceding gene: 16753053

Following gene: 16753055

Centisome position: 69.38

GC content: 42.98

Gene sequence:

>228_bases
ATGGAAGAGGTCCCCTTCGAAAATGCAATGCAACGACTAGAAGAAATTGTTGACCTTATGAATCAACCCACGACTTCTTT
GGATGCATCTCTAGCCCTATATGAAGAAGCTGATGCCTTAATGCGTATTTGTGAATCTCGTATTCGACAAGTAGAGCAAA
GAGTCCGTGAGTTGGCAGAAAAGCGTCATGAAAGTTCTCTCTTTGAGGAACAAGCTGTAGTTCGGTAG

Upstream 100 bases:

>100_bases
CTTACAAGAAAATGCTCGTGTAAGGATTCAGTTGCAAGATGGCGAGGCCATTTTAACTGTCACAAATATTGAAATTTGTA
AACTTATAAAAGGCTAAATC

Downstream 100 bases:

>100_bases
TCTTATGGTAGAAATCCATCACAAAGACCCCTCATTAAAAAAGTTATTCGCCTTACAACAATCTTTAGAAACCTTAAACT
CTTTGAGTGATATTGTAGCT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MEEVPFENAMQRLEEIVDLMNQPTTSLDASLALYEEADALMRICESRIRQVEQRVRELAEKRHESSLFEEQAVVR

Sequences:

>Translated_75_residues
MEEVPFENAMQRLEEIVDLMNQPTTSLDASLALYEEADALMRICESRIRQVEQRVRELAEKRHESSLFEEQAVVR
>Mature_75_residues
MEEVPFENAMQRLEEIVDLMNQPTTSLDASLALYEEADALMRICESRIRQVEQRVRELAEKRHESSLFEEQAVVR

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_CHLPN (Q9K1Y4)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   A81539
- RefSeq:   NP_445327.1
- RefSeq:   NP_877375.1
- ProteinModelPortal:   Q9K1Y4
- SMR:   Q9K1Y4
- GeneID:   1467783
- GeneID:   963721
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0788
- KEGG:   cpt:CpB1104
- TIGR:   CP_0788
- HOGENOM:   HBG728416
- OMA:   CESRIRK
- ProtClustDB:   PRK00977
- BioCyc:   CPNE115711:CP_0788-MONOMER
- BioCyc:   CPNE182082:CPB1104-MONOMER
- BRENDA:   3.1.11.6
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8809; Mature: 8809

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEVPFENAMQRLEEIVDLMNQPTTSLDASLALYEEADALMRICESRIRQVEQRVRELAE
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRHESSLFEEQAVVR
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MEEVPFENAMQRLEEIVDLMNQPTTSLDASLALYEEADALMRICESRIRQVEQRVRELAE
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRHESSLFEEQAVVR
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362