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The map label for this gene is rplW

Identifier: 16752395

GI number: 16752395

Start: 112655

End: 112990

Strand: Direct

Name: rplW

Synonym: CP0102

Alternate gene names: 16752395

Gene position: 112655-112990 (Clockwise)

Preceding gene: 16752394

Following gene: 16752396

Centisome position: 9.16

GC content: 38.39

Gene sequence:

>336_bases
ATGAAAGATCCTTATGATGTAATTAAGCGTCACTACGTAACAGAGAAAGCTAAAATGTTAGAGCATTTAAGCGCTGGAAC
TGGAGAGGGAAAGAAAAAGGGAAGCTTTTGTAAAGACCCTAAATTTGTTTTTATAGTCTCTCATGATGCAACAAAGCCAT
TAATCGCCCAAGCTTTAGAGGCAATTTACGTTGATAAAAATGTAAAAGTAAAGAGTGTGAACACCATAAATGTAAAACCT
CAACCCGCCCGCATGTTTCGAGGGCGCCGTAAAGGAAAAACCTCAGGATTTAAGAAAGCAATTGTAACTTTCTATCAAGG
GCACTCTGTCGGATAA

Upstream 100 bases:

>100_bases
TTAGCTTCTGCTCATAATATTGTTATTTCTAAAAAAGCTTTGCAGGAACTTGTTGAGCGTCTTGTTTCTGAAACGAAAGA
TTAAGAAGGAATTTTAGGAT

Downstream 100 bases:

>100_bases
TTTATTAGAGAGATAAACAGCATGTTTAAAAAATTTAAACCAGTAACTCCAGGAACTAGACAGCTGGTCCTTCCCGCTTT
TGATGAGTTAACAACGCGTG

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MKDPYDVIKRHYVTEKAKMLEHLSAGTGEGKKKGSFCKDPKFVFIVSHDATKPLIAQALEAIYVDKNVKVKSVNTINVKP
QPARMFRGRRKGKTSGFKKAIVTFYQGHSVG

Sequences:

>Translated_111_residues
MKDPYDVIKRHYVTEKAKMLEHLSAGTGEGKKKGSFCKDPKFVFIVSHDATKPLIAQALEAIYVDKNVKVKSVNTINVKP
QPARMFRGRRKGKTSGFKKAIVTFYQGHSVG
>Mature_111_residues
MKDPYDVIKRHYVTEKAKMLEHLSAGTGEGKKKGSFCKDPKFVFIVSHDATKPLIAQALEAIYVDKNVKVKSVNTINVKP
QPARMFRGRRKGKTSGFKKAIVTFYQGHSVG

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_CHLPN (Q9Z7Q9)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   B86571
- PIR:   G72055
- RefSeq:   NP_224841.1
- RefSeq:   NP_300701.1
- RefSeq:   NP_444654.1
- RefSeq:   NP_876943.1
- ProteinModelPortal:   Q9Z7Q9
- SMR:   Q9Z7Q9
- GeneID:   1467350
- GeneID:   895316
- GeneID:   919410
- GeneID:   963840
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0102
- KEGG:   cpn:CPn0645
- KEGG:   cpt:CpB0671
- TIGR:   CP_0102
- HOGENOM:   HBG439330
- OMA:   ITEKSMY
- ProtClustDB:   PRK05738
- BioCyc:   CPNE115711:CP_0102-MONOMER
- BioCyc:   CPNE115713:CPN0645-MONOMER
- BioCyc:   CPNE138677:CPJ0645-MONOMER
- BioCyc:   CPNE182082:CPB0671-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_B
- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 12425; Mature: 12425

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDPYDVIKRHYVTEKAKMLEHLSAGTGEGKKKGSFCKDPKFVFIVSHDATKPLIAQALE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
AIYVDKNVKVKSVNTINVKPQPARMFRGRRKGKTSGFKKAIVTFYQGHSVG
HHHCCCCCEEECEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKDPYDVIKRHYVTEKAKMLEHLSAGTGEGKKKGSFCKDPKFVFIVSHDATKPLIAQALE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
AIYVDKNVKVKSVNTINVKPQPARMFRGRRKGKTSGFKKAIVTFYQGHSVG
HHHCCCCCEEECEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362