| Definition | Chlamydophila pneumoniae AR39, complete genome. |
|---|---|
| Accession | NC_002179 |
| Length | 1,229,853 |
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Identifier: 16752338
GI number: 16752338
Start: 51900
End: 54659
Strand: Direct
Name: Not Available
Synonym: CP0044
Alternate gene names: 16752338
Gene position: 51900-54659 (Clockwise)
Preceding gene: 16752337
Following gene: 16752346
Centisome position: 4.22
GC content: 41.41
Gene sequence:
>2760_bases GTGAAAACTGTGATATTGAACATTGGAAGAAAAATCTTGCAAGGCATCAAAAAAAAGAAAAAAAAGATCGGGATTTTAAG TGGTCTCTTTTTTTTAGATTTAGTTTTACTTGGTGTAAGTTCCCAGAGGCCTACAGAGACCTCGGCAAATGTAAAACACA ATCTTAGAGATGAAAAGTTAGCTGCTTGTCCTAAAAATTCAGCAGCCTCACTTTCAGCAAAGAAAAGTCATACCAAGAAA ACCACTCCAGGTTCTATCCCCAGTAAAGTCTTCTCTAAATTCGACGCAACCCAAGATAAAACTTTCCAAAAGACTTCAGG ATCCGCATTCCCAGCAAAACCTACCACCCTGAAAGAACTGGAAGAGAGAAAAAAACCTCGACCAGAGCGTAGAACTACTG CCGATGTAAAAAGATCCCCACGCTTCTTACCAACACAAGAAGTCGAAGAGCCTGTACCTGCCGCCTCTAAAGAACAATTA GATAGTATACAGGTTTGGGAAGAAAAACAAAATTATGCTCGCAGAGCCGTAAATGCTATCAATCTGAGTATAAAAAAACA ACTCGAAGAGCAAACCTCCACAGTTACAGAGAAAGACGTCCAACCTAAAACACAAGCAACACCACACGCTTCGAAGAAAA ACGTTGCAAGTCCTTCGACCTCTATGCCAGGAATCGAGAAAGCAGCAACAACAGTGGCTGTACCTCAAGACAAATCTGAA GAAGAAAAAGTTAAAGAGCGATTGACAAAGCGGGAACTTACCTGTGAAGACCTTAAAGATAACGGCTATACTGTCAATTT TGAAGACATTTCTATTTTAGAGTTGTTGCAGTTCGTAAGTAAAATTTCTGGAACGAACTTTGTCTTTGATAGCAACGATT TGCAATTCAATGTCACGATCGTTTCCCACGATCCTACTTCTGTAGATGATTTATCTACAATCTTACTACAAGTCTTAAAA ATGCATGACTTGAAGGTTGTTGAACAAGGCAATAACGTCCTTATCTATCGTAATCCTCATCTTTCTAAGCTATCCACAGT AGTCACAGACAGCTCCTTAAAAGAAACGTGTGAAGCTGTTGTGGTTACCCGAGTGTTCCGTCTTTACAGCGTCAGCCCCT CTGCAGCAGTAAATATTATTCAACCTTTACTTTCCCATGATGCTATCGTTAGTGCTTCAGAAGCTACTCGTCATGTTATC ATCTCGGATATTGCTGGTAATGTCGATAAAGTCAGTGATTTGCTAGCAGCTCTAGATTGCCCAGGCACATCTGTGGACAT GACTGAATACGAAGTTAAATATGCCAATCCCGCAGCTCTTGTTAGCTACTGCCAAGATGTTCTTGGTACTCTGGCCGAAG ATGATGCTTTCCAAATGTTCATCCAACCTGGAACGAACAAAATTTTCGTCGTCTCTTCACCACGTCTTGCAAATAAGGCA GAGCAGCTCCTGAAGTCCTTAGATGTCCCAGAAATGGCACATACCCTAGATGATCCTGCAAGTACTGCCTTGGCTTTGGG AGGAACAGGAACCACGAGCCCTAAGAGTTTGCGGTTCTTTATGTACAAGCTGAAGTATCAAAATGGAGAAGTGATTGCTA ATGCCCTCCAAGATATCGGTTACAATCTATATGTAACCACAGCTATGGACGAAGATTTCATTAACACTCTCAATAGTATC CAGTGGTTAGAGGTCAATAACTCCATAGTTATTATCGGAAACCAAGGGAATGTCGACAGAGTTATTGGCCTCTTAAACGG TTTAGATTTACCTCCTAAACAGGTTTACATCGAAGTTTTAATTCTAGATACCAGCTTAGAGAAATCCTGGGACTTTGGAG TGCAATGGGTAGCCCTAGGTGATGAACAAAGTAAAGTAGCTTATGCTTCTGGACTATTGAATAATACTGGCATAGCCACA CCTACAAAAGCAACTGTCCCTCCCGGCACGCCAAATCCTGGTTCGATCCCTCTTCCTACGCCAGGACAATTGACAGGGTT CTCAGATATGCTGAACTCTTCGTCAGCATTCGGTCTAGGAATCATCGGAAATGTCCTAAGTCATAAAGGGAAGTCTTTCC TTACTTTGGGAGGCTTATTAAGTGCCTTAGATCAAGATGGAGATACTGTCATTGTCTTGAATCCTAGAATCATGGCTCAG GATACGCAACAAGCTTCGTTTTTTGTAGGGCAAACGGTCCCTTACCAAACTACAAATACTATTATCCAAGAAACAGGAAC TGTAACGCAAAATATCGATTATGAAGATATTGGAGTGAACCTTGTCGTTACCTCTACAGTTGCTCCCAACAATGTAGTTA CACTACAAATCGAACAGACGATCTCAGAATTACATTCCGCGTCTGGATCACTAACACCTGTCACAGATAAAACTTATGCA GCCACACGCTTACAAATTCCCGACGGTTGTTTCTTAGTTATGAGTGGGCATATCAGAGATAAAACTACAAAAGTGGTTTC AGGAGTGCCTTTGCTAAACTCCATACCATTAATTCGTGGTTTATTTAGCCGTACCATCGACCAAAGGCAAAAACGCAATA TCATGATGTTTATTAAGCCTAAGGTGATTAGTAGCTTTGAAGAAGGCACTCGTGTTACCAATAAGGAAGGATACAGATAC AATTGGGAAGCTGATGAAGGATCCATGCAAGTGGCCCCTCGCCATGCTCCTGAATGCCAAGGACCTCCTTCTTTACAGGC TGAAAGTGACTTTAAAATAATAGAAATAGAAGCTCAGTAG
Upstream 100 bases:
>100_bases AAGCTATATTCTGTCCCATAGAGAGCATACATGGTGGAATACAAAGTCGTCAGCACGGAAGTAACTCTCCCTCAACGCTC ATTAGCTTAAAAAGAATCCG
Downstream 100 bases:
>100_bases TGGTATATAAAAGAGGAAGATGATATTCTCCGCCGTGGAATAGCTTCTGACTCTGTTGCATTCAGGGGGAAAGCCAAGAA GATGTAGAGTCGGCCGTATA
Product: type III secretion protein SctC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 919; Mature: 919
Protein sequence:
>919_residues MKTVILNIGRKILQGIKKKKKKIGILSGLFFLDLVLLGVSSQRPTETSANVKHNLRDEKLAACPKNSAASLSAKKSHTKK TTPGSIPSKVFSKFDATQDKTFQKTSGSAFPAKPTTLKELEERKKPRPERRTTADVKRSPRFLPTQEVEEPVPAASKEQL DSIQVWEEKQNYARRAVNAINLSIKKQLEEQTSTVTEKDVQPKTQATPHASKKNVASPSTSMPGIEKAATTVAVPQDKSE EEKVKERLTKRELTCEDLKDNGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTIVSHDPTSVDDLSTILLQVLK MHDLKVVEQGNNVLIYRNPHLSKLSTVVTDSSLKETCEAVVVTRVFRLYSVSPSAAVNIIQPLLSHDAIVSASEATRHVI ISDIAGNVDKVSDLLAALDCPGTSVDMTEYEVKYANPAALVSYCQDVLGTLAEDDAFQMFIQPGTNKIFVVSSPRLANKA EQLLKSLDVPEMAHTLDDPASTALALGGTGTTSPKSLRFFMYKLKYQNGEVIANALQDIGYNLYVTTAMDEDFINTLNSI QWLEVNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGDEQSKVAYASGLLNNTGIAT PTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQ DTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLTPVTDKTYA ATRLQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEGYRY NWEADEGSMQVAPRHAPECQGPPSLQAESDFKIIEIEAQ
Sequences:
>Translated_919_residues MKTVILNIGRKILQGIKKKKKKIGILSGLFFLDLVLLGVSSQRPTETSANVKHNLRDEKLAACPKNSAASLSAKKSHTKK TTPGSIPSKVFSKFDATQDKTFQKTSGSAFPAKPTTLKELEERKKPRPERRTTADVKRSPRFLPTQEVEEPVPAASKEQL DSIQVWEEKQNYARRAVNAINLSIKKQLEEQTSTVTEKDVQPKTQATPHASKKNVASPSTSMPGIEKAATTVAVPQDKSE EEKVKERLTKRELTCEDLKDNGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTIVSHDPTSVDDLSTILLQVLK MHDLKVVEQGNNVLIYRNPHLSKLSTVVTDSSLKETCEAVVVTRVFRLYSVSPSAAVNIIQPLLSHDAIVSASEATRHVI ISDIAGNVDKVSDLLAALDCPGTSVDMTEYEVKYANPAALVSYCQDVLGTLAEDDAFQMFIQPGTNKIFVVSSPRLANKA EQLLKSLDVPEMAHTLDDPASTALALGGTGTTSPKSLRFFMYKLKYQNGEVIANALQDIGYNLYVTTAMDEDFINTLNSI QWLEVNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGDEQSKVAYASGLLNNTGIAT PTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQ DTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLTPVTDKTYA ATRLQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEGYRY NWEADEGSMQVAPRHAPECQGPPSLQAESDFKIIEIEAQ >Mature_919_residues MKTVILNIGRKILQGIKKKKKKIGILSGLFFLDLVLLGVSSQRPTETSANVKHNLRDEKLAACPKNSAASLSAKKSHTKK TTPGSIPSKVFSKFDATQDKTFQKTSGSAFPAKPTTLKELEERKKPRPERRTTADVKRSPRFLPTQEVEEPVPAASKEQL DSIQVWEEKQNYARRAVNAINLSIKKQLEEQTSTVTEKDVQPKTQATPHASKKNVASPSTSMPGIEKAATTVAVPQDKSE EEKVKERLTKRELTCEDLKDNGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTIVSHDPTSVDDLSTILLQVLK MHDLKVVEQGNNVLIYRNPHLSKLSTVVTDSSLKETCEAVVVTRVFRLYSVSPSAAVNIIQPLLSHDAIVSASEATRHVI ISDIAGNVDKVSDLLAALDCPGTSVDMTEYEVKYANPAALVSYCQDVLGTLAEDDAFQMFIQPGTNKIFVVSSPRLANKA EQLLKSLDVPEMAHTLDDPASTALALGGTGTTSPKSLRFFMYKLKYQNGEVIANALQDIGYNLYVTTAMDEDFINTLNSI QWLEVNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGDEQSKVAYASGLLNNTGIAT PTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQ DTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLTPVTDKTYA ATRLQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEGYRY NWEADEGSMQVAPRHAPECQGPPSLQAESDFKIIEIEAQ
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG1450
COG function: function code NU; Type II secretory pathway, component PulD
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=652, Percent_Identity=23.7730061349693, Blast_Score=114, Evalue=4e-26, Organism=Escherichia coli, GI1789793, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR004846 - InterPro: IPR013356 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 100393; Mature: 100393
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTVILNIGRKILQGIKKKKKKIGILSGLFFLDLVLLGVSSQRPTETSANVKHNLRDEKL CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCHHHH AACPKNSAASLSAKKSHTKKTTPGSIPSKVFSKFDATQDKTFQKTSGSAFPAKPTTLKEL HCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHH EERKKPRPERRTTADVKRSPRFLPTQEVEEPVPAASKEQLDSIQVWEEKQNYARRAVNAI HHHCCCCCCCCCCHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH NLSIKKQLEEQTSTVTEKDVQPKTQATPHASKKNVASPSTSMPGIEKAATTVAVPQDKSE HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEECCCCCCH EEKVKERLTKRELTCEDLKDNGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTI HHHHHHHHHHHCCCHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCEEEEEEE VSHDPTSVDDLSTILLQVLKMHDLKVVEQGNNVLIYRNPHLSKLSTVVTDSSLKETCEAV EECCCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEECCCHHHHHHHHCCHHHHHHHHHH VVTRVFRLYSVSPSAAVNIIQPLLSHDAIVSASEATRHVIISDIAGNVDKVSDLLAALDC HHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCHHEEEEEHHCCCHHHHHHHHHHHCC PGTSVDMTEYEVKYANPAALVSYCQDVLGTLAEDDAFQMFIQPGTNKIFVVSSPRLANKA CCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCHHHHH EQLLKSLDVPEMAHTLDDPASTALALGGTGTTSPKSLRFFMYKLKYQNGEVIANALQDIG HHHHHHCCCCHHHHHCCCCCHHEEEECCCCCCCCHHHEEEEEEEECCCCHHHHHHHHHCC YNLYVTTAMDEDFINTLNSIQWLEVNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVL CEEEEEEECCHHHHHHHCCEEEEEECCEEEEEECCCCHHHHHHHHHCCCCCCHHEEEEEE ILDTSLEKSWDFGVQWVALGDEQSKVAYASGLLNNTGIATPTKATVPPGTPNPGSIPLPT EEECCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQ CCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCEEEEECCEEEEC DTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQT CCCCCEEEECCCCCCCHHHHHHHCCCCEECCCCHHHCCEEEEEEEECCCCCEEEEEEHHH ISELHSASGSLTPVTDKTYAATRLQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRG HHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHCCCCCHHCCHHHHH LFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEGYRYNWEADEGSMQVAPRHAPECQ HHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEECCCCCCCCC GPPSLQAESDFKIIEIEAQ CCCCCCCCCCEEEEEEECC >Mature Secondary Structure MKTVILNIGRKILQGIKKKKKKIGILSGLFFLDLVLLGVSSQRPTETSANVKHNLRDEKL CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCHHHH AACPKNSAASLSAKKSHTKKTTPGSIPSKVFSKFDATQDKTFQKTSGSAFPAKPTTLKEL HCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHH EERKKPRPERRTTADVKRSPRFLPTQEVEEPVPAASKEQLDSIQVWEEKQNYARRAVNAI HHHCCCCCCCCCCHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH NLSIKKQLEEQTSTVTEKDVQPKTQATPHASKKNVASPSTSMPGIEKAATTVAVPQDKSE HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEECCCCCCH EEKVKERLTKRELTCEDLKDNGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTI HHHHHHHHHHHCCCHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCEEEEEEE VSHDPTSVDDLSTILLQVLKMHDLKVVEQGNNVLIYRNPHLSKLSTVVTDSSLKETCEAV EECCCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEECCCHHHHHHHHCCHHHHHHHHHH VVTRVFRLYSVSPSAAVNIIQPLLSHDAIVSASEATRHVIISDIAGNVDKVSDLLAALDC HHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCHHEEEEEHHCCCHHHHHHHHHHHCC PGTSVDMTEYEVKYANPAALVSYCQDVLGTLAEDDAFQMFIQPGTNKIFVVSSPRLANKA CCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCHHHHH EQLLKSLDVPEMAHTLDDPASTALALGGTGTTSPKSLRFFMYKLKYQNGEVIANALQDIG HHHHHHCCCCHHHHHCCCCCHHEEEECCCCCCCCHHHEEEEEEEECCCCHHHHHHHHHCC YNLYVTTAMDEDFINTLNSIQWLEVNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVL CEEEEEEECCHHHHHHHCCEEEEEECCEEEEEECCCCHHHHHHHHHCCCCCCHHEEEEEE ILDTSLEKSWDFGVQWVALGDEQSKVAYASGLLNNTGIATPTKATVPPGTPNPGSIPLPT EEECCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQ CCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCEEEEECCEEEEC DTQQASFFVGQTVPYQTTNTIIQETGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQT CCCCCEEEECCCCCCCHHHHHHHCCCCEECCCCHHHCCEEEEEEEECCCCCEEEEEEHHH ISELHSASGSLTPVTDKTYAATRLQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRG HHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHCCCCCHHCCHHHHH LFSRTIDQRQKRNIMMFIKPKVISSFEEGTRVTNKEGYRYNWEADEGSMQVAPRHAPECQ HHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEECCCCCCCCC GPPSLQAESDFKIIEIEAQ CCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934833; 10984043 [H]