| Definition | Chlamydophila pneumoniae AR39, complete genome. |
|---|---|
| Accession | NC_002179 |
| Length | 1,229,853 |
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Identifier: 16752328
GI number: 16752328
Start: 42270
End: 44807
Strand: Direct
Name: Not Available
Synonym: CP0034
Alternate gene names: NA
Gene position: 42270-44807 (Clockwise)
Preceding gene: 16752327
Following gene: 16752329
Centisome position: 3.44
GC content: 39.99
Gene sequence:
>2538_bases ATGGCAGTACGATTAATTGTTGATGAAGGCCCCTTGTCTGGTGTAATTTTTGTTCTGGAAGATGGGATAAGCTGGTCTAT AGGACGCGACTCTAGTGCTAATGACATTCCTATTGAAGATCCTAAACTCGGTGCATCGCAAGCCATTATCAATAAGACTG ACGGAAGCTACTACATCACAAATTTAGATGATACAATTCCTATTGTTGTAAATGGCGTAGCGATCCAAGAAACTACACAG TTAAAAAATGAAGATACTATCTTATTAGGAAGCAATCAGTATTCTTTCTTATCAGATGAATTTGATCCTCAAGATCTTGT TTATGATTTTGATATTCCCGAAGAAAATTTTTCTAATGATTCAGGGGATTTGTCCGATAGTAATGAACAGGGAAAAGATC TTGAGCCTCGGCAAACTTCGGAAACAAATCATTCACCGAAGCCTAAGGAAAAGCTGACCAAAGATCAGGGAAGTAGCGAT CCAATTACAAGTGGGGATCAGGAGCTTGCTGATGCTTTTTTAGCATCAGCAAAAGCGGAAAAAAATCAACCAAGAGCCAA AGTTGCTAAGAAGGGTTTAAAAGAATCTTCAAACGAGTCTTTGAATCCAAAGGAACAAAATGCAAAGGATTCTCCGAAAG GAGAGGAAAGAACCAACAAACCCCAGAACGCCATTATGGAAGATAACGGAGCTTCGCCTAGGCAAGATCCGCAACCAAAG TCAGCAGAACCCTCTCTTAAAAACACAGCCAGGGATGAGACTCCCTTGAAAGAAAATAAACCTGTAGAAGAGAAGGCTAA TAAGAAAGCAACACCGGATTCTCCAGAAAAAAAAGATCAACCTGAGGAAGGTTCTAAAAAGGAAGGCTCTAAAATAGAAG CAACACCTTTGGATTCACAAAAAGAATCCGAGGATAAGGAAGCAGAAGAAGCCTTTGTACAAGAAGAAGAAGAGAACCTT ACGGAAGATAATAAAGAAGATTCTGACAGTGCCGCTGATGCAAATGACGACACGGCAAGTGACCATACTGCAGAGGATAA CAAAGAAACTCCTAAAAAAGTCGAGAACGAAAAGAGCGCAGTTCTATCCCCATTTCATGTTCAAGACTTATTTCGATTCG ATCAAACAATTTTTCCAGCAGAGATTGATGATATTGCGAAAAAAAATATCTCTGTAGACTTGACGCAGCCTTCTCGTTTT TTACTCAAAGTTTTAGCCGGAGCTAATATTGGAGCAGAGTTCCATTTAGACTCAGGAAAAACCTATATTTTAGGTACGGA TCCTACAACTTGTGACATAGTATTTAATGACTTAAGTGTTTCTCATCAACATGCTAAAATTACTGTCGGTAATGACGGGG GCATTCTTATCGAGGATCTCGATAGTAAAAACGGTGTCATTGTTGAAGGACGAAAAATTGATAAGACCTCTACATTGAGC TCGAATCAAGTTGTGGCTTTAGGAACGACATTATTTTTACTTATAGATCATCATGCCCCCGCTGATACTATAGTTGCTTC TCTATCCCCAGACGATTACAGTTTGTTTGGGAGACAGCAAGACGCCGAAGCCTTAGAAAGACAAGAGGCCCAAGAAGAAG AAGAAAAACAAAAACGCGCTACACTACCCGCAGGATCTTTCATTCTTACCCTGTTTGTTGGAGGATTGGCTATTCTCTTT GGTATAGGAACAGCTTCTCTTTTCCATACCAAAGAAGTGGTTCCTTTAGAAAATATTGATTATCAAGAAGATCTTGCCCA GGTTATCAATCAGTTCCCTACGGTGCGTTATACGTTTAATAAAACGAACAGCCAACTTTTCTTAATCGGACATGTCAAAA ATAGTACGGACAAAAGCGAGCTGCTGTATAAAGTAGACGCCCTTTCCTTTGTGAAATCCGTAGATGATAATGTTATTGAT GATGAAGCTGTTTGGCAGGAGATGAACATCCTGTTATCAAAGCGACCCGAGTTTAAAGGCATCAGCATGCATTCCCCAGA ACCTGGGAAATTCATCATCACAGGCTATGTCAAGACTGAGGAGCAAGCAGCTTGCCTCGTTGATTATTTAAATATACATT TTAATTACCTCTCGTTACTAGAGAATAAAGTTGTTGTTGAAACCCAGATGTTAAAAGCAATTGCAGGCCATCTTCTTCAA GGAGGTTTTGCAAACATCCATGTGGCCTTTGTGAACGGTGAAGTTATCCTTACTGGTTACGTCAATAACGATGATGCAGA GAAGTTCCGTGCTGTAGTGCAAGAGCTGTCGGGGATTCCTGGTGTGAGGTTGGTCAAGAATTTTGCTGTCTTACTCCCAG CTGAAGAGGGAATCATAGATTTAAACCTACGTTACCCCAATCGCTATCGTGTTACAGGCTATTCTAGATACGGAGAAATA AGTATCAATGTAGTTGTCAATGGCAGAATCCTCACAAGAGGGGACGTGATTGATGGTATGACAGTAACAAGTATACAACC TAACGCGATCTTTTTAGAGAAGGAAGGGTTGAAATATAAAATAGACTACAATAAATAA
Upstream 100 bases:
>100_bases ACATATGATGATTTTGTACGACATGTTGAGAGTTTTATGAATTTTTCAGAGACATGGCTGTCAGATCTTGGCCTAGGTAA ACAGTAACAAGGTGGAATAA
Downstream 100 bases:
>100_bases CCAAGTATTGGGGTTTATTAATTATTTATATTTAGGTAGATATTCTATGTTTAATATGGAAAATACAGCGAAAGAAGAAA AAAATTCTCAACCGCTGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Type III Secretion System Protein SctD; Adenylate Cyclase
Number of amino acids: Translated: 845; Mature: 844
Protein sequence:
>845_residues MAVRLIVDEGPLSGVIFVLEDGISWSIGRDSSANDIPIEDPKLGASQAIINKTDGSYYITNLDDTIPIVVNGVAIQETTQ LKNEDTILLGSNQYSFLSDEFDPQDLVYDFDIPEENFSNDSGDLSDSNEQGKDLEPRQTSETNHSPKPKEKLTKDQGSSD PITSGDQELADAFLASAKAEKNQPRAKVAKKGLKESSNESLNPKEQNAKDSPKGEERTNKPQNAIMEDNGASPRQDPQPK SAEPSLKNTARDETPLKENKPVEEKANKKATPDSPEKKDQPEEGSKKEGSKIEATPLDSQKESEDKEAEEAFVQEEEENL TEDNKEDSDSAADANDDTASDHTAEDNKETPKKVENEKSAVLSPFHVQDLFRFDQTIFPAEIDDIAKKNISVDLTQPSRF LLKVLAGANIGAEFHLDSGKTYILGTDPTTCDIVFNDLSVSHQHAKITVGNDGGILIEDLDSKNGVIVEGRKIDKTSTLS SNQVVALGTTLFLLIDHHAPADTIVASLSPDDYSLFGRQQDAEALERQEAQEEEEKQKRATLPAGSFILTLFVGGLAILF GIGTASLFHTKEVVPLENIDYQEDLAQVINQFPTVRYTFNKTNSQLFLIGHVKNSTDKSELLYKVDALSFVKSVDDNVID DEAVWQEMNILLSKRPEFKGISMHSPEPGKFIITGYVKTEEQAACLVDYLNIHFNYLSLLENKVVVETQMLKAIAGHLLQ GGFANIHVAFVNGEVILTGYVNNDDAEKFRAVVQELSGIPGVRLVKNFAVLLPAEEGIIDLNLRYPNRYRVTGYSRYGEI SINVVVNGRILTRGDVIDGMTVTSIQPNAIFLEKEGLKYKIDYNK
Sequences:
>Translated_845_residues MAVRLIVDEGPLSGVIFVLEDGISWSIGRDSSANDIPIEDPKLGASQAIINKTDGSYYITNLDDTIPIVVNGVAIQETTQ LKNEDTILLGSNQYSFLSDEFDPQDLVYDFDIPEENFSNDSGDLSDSNEQGKDLEPRQTSETNHSPKPKEKLTKDQGSSD PITSGDQELADAFLASAKAEKNQPRAKVAKKGLKESSNESLNPKEQNAKDSPKGEERTNKPQNAIMEDNGASPRQDPQPK SAEPSLKNTARDETPLKENKPVEEKANKKATPDSPEKKDQPEEGSKKEGSKIEATPLDSQKESEDKEAEEAFVQEEEENL TEDNKEDSDSAADANDDTASDHTAEDNKETPKKVENEKSAVLSPFHVQDLFRFDQTIFPAEIDDIAKKNISVDLTQPSRF LLKVLAGANIGAEFHLDSGKTYILGTDPTTCDIVFNDLSVSHQHAKITVGNDGGILIEDLDSKNGVIVEGRKIDKTSTLS SNQVVALGTTLFLLIDHHAPADTIVASLSPDDYSLFGRQQDAEALERQEAQEEEEKQKRATLPAGSFILTLFVGGLAILF GIGTASLFHTKEVVPLENIDYQEDLAQVINQFPTVRYTFNKTNSQLFLIGHVKNSTDKSELLYKVDALSFVKSVDDNVID DEAVWQEMNILLSKRPEFKGISMHSPEPGKFIITGYVKTEEQAACLVDYLNIHFNYLSLLENKVVVETQMLKAIAGHLLQ GGFANIHVAFVNGEVILTGYVNNDDAEKFRAVVQELSGIPGVRLVKNFAVLLPAEEGIIDLNLRYPNRYRVTGYSRYGEI SINVVVNGRILTRGDVIDGMTVTSIQPNAIFLEKEGLKYKIDYNK >Mature_844_residues AVRLIVDEGPLSGVIFVLEDGISWSIGRDSSANDIPIEDPKLGASQAIINKTDGSYYITNLDDTIPIVVNGVAIQETTQL KNEDTILLGSNQYSFLSDEFDPQDLVYDFDIPEENFSNDSGDLSDSNEQGKDLEPRQTSETNHSPKPKEKLTKDQGSSDP ITSGDQELADAFLASAKAEKNQPRAKVAKKGLKESSNESLNPKEQNAKDSPKGEERTNKPQNAIMEDNGASPRQDPQPKS AEPSLKNTARDETPLKENKPVEEKANKKATPDSPEKKDQPEEGSKKEGSKIEATPLDSQKESEDKEAEEAFVQEEEENLT EDNKEDSDSAADANDDTASDHTAEDNKETPKKVENEKSAVLSPFHVQDLFRFDQTIFPAEIDDIAKKNISVDLTQPSRFL LKVLAGANIGAEFHLDSGKTYILGTDPTTCDIVFNDLSVSHQHAKITVGNDGGILIEDLDSKNGVIVEGRKIDKTSTLSS NQVVALGTTLFLLIDHHAPADTIVASLSPDDYSLFGRQQDAEALERQEAQEEEEKQKRATLPAGSFILTLFVGGLAILFG IGTASLFHTKEVVPLENIDYQEDLAQVINQFPTVRYTFNKTNSQLFLIGHVKNSTDKSELLYKVDALSFVKSVDDNVIDD EAVWQEMNILLSKRPEFKGISMHSPEPGKFIITGYVKTEEQAACLVDYLNIHFNYLSLLENKVVVETQMLKAIAGHLLQG GFANIHVAFVNGEVILTGYVNNDDAEKFRAVVQELSGIPGVRLVKNFAVLLPAEEGIIDLNLRYPNRYRVTGYSRYGEIS INVVVNGRILTRGDVIDGMTVTSIQPNAIFLEKEGLKYKIDYNK
Specific function: Unknown
COG id: COG1716
COG function: function code T; FOG: FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93156; Mature: 93025
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: PS50914 BON ; PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVRLIVDEGPLSGVIFVLEDGISWSIGRDSSANDIPIEDPKLGASQAIINKTDGSYYIT CEEEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCHHEEECCCCCEEEE NLDDTIPIVVNGVAIQETTQLKNEDTILLGSNQYSFLSDEFDPQDLVYDFDIPEENFSND CCCCCCEEEEECEEEEHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCC SGDLSDSNEQGKDLEPRQTSETNHSPKPKEKLTKDQGSSDPITSGDQELADAFLASAKAE CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC KNQPRAKVAKKGLKESSNESLNPKEQNAKDSPKGEERTNKPQNAIMEDNGASPRQDPQPK CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCCCCC SAEPSLKNTARDETPLKENKPVEEKANKKATPDSPEKKDQPEEGSKKEGSKIEATPLDSQ CCCCCHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC KESEDKEAEEAFVQEEEENLTEDNKEDSDSAADANDDTASDHTAEDNKETPKKVENEKSA CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHH VLSPFHVQDLFRFDQTIFPAEIDDIAKKNISVDLTQPSRFLLKVLAGANIGAEFHLDSGK HCCCHHHHHHHHHCCCCCCCHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCEEEEECCCC TYILGTDPTTCDIVFNDLSVSHQHAKITVGNDGGILIEDLDSKNGVIVEGRKIDKTSTLS EEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCCCCCC SNQVVALGTTLFLLIDHHAPADTIVASLSPDDYSLFGRQQDAEALERQEAQEEEEKQKRA CCCEEEEEEEEEEEEECCCCHHHEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHH TLPAGSFILTLFVGGLAILFGIGTASLFHTKEVVPLENIDYQEDLAQVINQFPTVRYTFN CCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE KTNSQLFLIGHVKNSTDKSELLYKVDALSFVKSVDDNVIDDEAVWQEMNILLSKRPEFKG CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC ISMHSPEPGKFIITGYVKTEEQAACLVDYLNIHFNYLSLLENKVVVETQMLKAIAGHLLQ CCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC GGFANIHVAFVNGEVILTGYVNNDDAEKFRAVVQELSGIPGVRLVKNFAVLLPAEEGIID CCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCEEEEEECCCCEEE LNLRYPNRYRVTGYSRYGEISINVVVNGRILTRGDVIDGMTVTSIQPNAIFLEKEGLKYK EEEECCCEEEEEEECEECEEEEEEEECCEEEECCCCCCCEEEEEECCCEEEEECCCCEEE IDYNK EECCC >Mature Secondary Structure AVRLIVDEGPLSGVIFVLEDGISWSIGRDSSANDIPIEDPKLGASQAIINKTDGSYYIT EEEEEEECCCCCEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCHHEEECCCCCEEEE NLDDTIPIVVNGVAIQETTQLKNEDTILLGSNQYSFLSDEFDPQDLVYDFDIPEENFSND CCCCCCEEEEECEEEEHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCC SGDLSDSNEQGKDLEPRQTSETNHSPKPKEKLTKDQGSSDPITSGDQELADAFLASAKAE CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC KNQPRAKVAKKGLKESSNESLNPKEQNAKDSPKGEERTNKPQNAIMEDNGASPRQDPQPK CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCCCCC SAEPSLKNTARDETPLKENKPVEEKANKKATPDSPEKKDQPEEGSKKEGSKIEATPLDSQ CCCCCHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC KESEDKEAEEAFVQEEEENLTEDNKEDSDSAADANDDTASDHTAEDNKETPKKVENEKSA CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHH VLSPFHVQDLFRFDQTIFPAEIDDIAKKNISVDLTQPSRFLLKVLAGANIGAEFHLDSGK HCCCHHHHHHHHHCCCCCCCHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCEEEEECCCC TYILGTDPTTCDIVFNDLSVSHQHAKITVGNDGGILIEDLDSKNGVIVEGRKIDKTSTLS EEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCCCCCC SNQVVALGTTLFLLIDHHAPADTIVASLSPDDYSLFGRQQDAEALERQEAQEEEEKQKRA CCCEEEEEEEEEEEEECCCCHHHEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHH TLPAGSFILTLFVGGLAILFGIGTASLFHTKEVVPLENIDYQEDLAQVINQFPTVRYTFN CCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE KTNSQLFLIGHVKNSTDKSELLYKVDALSFVKSVDDNVIDDEAVWQEMNILLSKRPEFKG CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC ISMHSPEPGKFIITGYVKTEEQAACLVDYLNIHFNYLSLLENKVVVETQMLKAIAGHLLQ CCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC GGFANIHVAFVNGEVILTGYVNNDDAEKFRAVVQELSGIPGVRLVKNFAVLLPAEEGIID CCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCEEEEEECCCCEEE LNLRYPNRYRVTGYSRYGEISINVVVNGRILTRGDVIDGMTVTSIQPNAIFLEKEGLKYK EEEECCCEEEEEEECEECEEEEEEEECCEEEECCCCCCCEEEEEECCCEEEEECCCCEEE IDYNK EECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA