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The map label for this gene is yebA [C]

Identifier: 167040956

GI number: 167040956

Start: 2384607

End: 2385965

Strand: Reverse

Name: yebA [C]

Synonym: Teth514_2345

Alternate gene names: 167040956

Gene position: 2385965-2384607 (Counterclockwise)

Preceding gene: 167040959

Following gene: 167040955

Centisome position: 97.1

GC content: 34.29

Gene sequence:

>1359_bases
ATGGGGAAGGTGGGGGATAAAAGCTATAAGTTTTTTCTTGGTTTATTAAAGACTTACAAGAACAATATTATAGCTTTTGT
GGTAGCACTGTCCATAGGTCTTTCTTTTATTGTATATGAAGAAGGATTTGCCTACAAGATAACAGTAGATGGTGAAACTA
TTGGAATTACCAAGAATATAGATGAGGTAAAAAGTTTTATAGAAGAATTACATAAAAAAGAAAAGCAAAAGACAGGAACG
GATATAGTTTTAAATCAGCAAATAAAATTTGAAAGGGTAAGAGTATCAAATAAAGAGTTGACAGATGTACATAAAATTTA
TGCTAATTTGGAAAATGCTATGAGTTTTAGCTGCAAAGCTGCTGCCATAATAGTAGATGGCAAGTTTGTGACTGCGTTAA
AAAATGAAGAAGAGGCAAATAAGGTTCTTGAAATGTTAAAGAATAAATACGCAAGGGATTCTGATAGAACATATTTTAAA
GAGGATGTCAAAATTGAAGAAAAGTACATACCTCCAAAATATTTAGTAAGCTTTGAGGAAGCGTTAAAAATATTGCAACA
ACCTGTAAAAAAAGCTGTTACATACACTGTAAAAGAAAACGATAGTTTGTGGTCTATTGCAAGAGCTCACGACATGTACA
TTGATGATATTTTAAAATTAAATCCTGGCCTTACAGAAAATTTAAAACCAGGACAAGTAATATATTTATCTTCTGCTGTA
CCTAATGTCACGGTTGTTACTGAAAAGAGAATAGTTTACAAAGAGAAAATACCTTTTGAGACAAAGCTTACTAAAGATGA
CAAATTGTATACCAATCAGTCTAAAGTGTTAGTAGAAGGTAAAAAAGGCTTGAAAGAGGTAACTGCTGTTGTTGTAAGTT
ACAATGGCGTTGAGGTTTCAAAAGAGGTAAAGAGTGAAAATATACTTGAAAAGCCTATCAACAAAATAGTTGCAGTAGGT
TCCAGAAGAATATCTTATGTTGCTACAGGGTCTTTTAATTATCCTGCGAGAGGTACAATAACCTCAAGATTTGGACAAAG
GTGGGGAAGGTTTCACACAGGAGTTGATATAGCGGCACCACAAGGTTCGCCTATTTATGCTGCGGATGGAGGTACTGTTA
TATTTTCAGGTTGGGAGAGTGGATATGGCTATTTAGTCAAAATTGACCATCACAATGGTTATGTTACTTATTACGGACAT
GCTAGTAAGCTCCTTGTTAAGAAAGGCGATAAAGTGGCGAAAGGACAAAAAATTGCTTTGGTAGGTTCGACAGGTCGTGC
TACAGGTCCCCATTTACATTTTGAGGTTAGGAAAAATGGAGTGCCTATTGATCCTATGCCCTTTTTAAATAGAAGATAA

Upstream 100 bases:

>100_bases
TACAATATAGAAAGATGCTAAAAATTTCATTAATTAAAATTTGGTTTTACAAAAAAGTATGGTATAATTAAAAAAGATTA
ACAGAAGAAAGGAGAATACT

Downstream 100 bases:

>100_bases
TTTCGGTAAAAAGCCCAGAATGGGCTTTTTAATTTTTATGGGATTGATATAAAAAAAGATAAGTGTTATAATACTGTTGT
TGTTTGCTTTACATAAACCT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MGKVGDKSYKFFLGLLKTYKNNIIAFVVALSIGLSFIVYEEGFAYKITVDGETIGITKNIDEVKSFIEELHKKEKQKTGT
DIVLNQQIKFERVRVSNKELTDVHKIYANLENAMSFSCKAAAIIVDGKFVTALKNEEEANKVLEMLKNKYARDSDRTYFK
EDVKIEEKYIPPKYLVSFEEALKILQQPVKKAVTYTVKENDSLWSIARAHDMYIDDILKLNPGLTENLKPGQVIYLSSAV
PNVTVVTEKRIVYKEKIPFETKLTKDDKLYTNQSKVLVEGKKGLKEVTAVVVSYNGVEVSKEVKSENILEKPINKIVAVG
SRRISYVATGSFNYPARGTITSRFGQRWGRFHTGVDIAAPQGSPIYAADGGTVIFSGWESGYGYLVKIDHHNGYVTYYGH
ASKLLVKKGDKVAKGQKIALVGSTGRATGPHLHFEVRKNGVPIDPMPFLNRR

Sequences:

>Translated_452_residues
MGKVGDKSYKFFLGLLKTYKNNIIAFVVALSIGLSFIVYEEGFAYKITVDGETIGITKNIDEVKSFIEELHKKEKQKTGT
DIVLNQQIKFERVRVSNKELTDVHKIYANLENAMSFSCKAAAIIVDGKFVTALKNEEEANKVLEMLKNKYARDSDRTYFK
EDVKIEEKYIPPKYLVSFEEALKILQQPVKKAVTYTVKENDSLWSIARAHDMYIDDILKLNPGLTENLKPGQVIYLSSAV
PNVTVVTEKRIVYKEKIPFETKLTKDDKLYTNQSKVLVEGKKGLKEVTAVVVSYNGVEVSKEVKSENILEKPINKIVAVG
SRRISYVATGSFNYPARGTITSRFGQRWGRFHTGVDIAAPQGSPIYAADGGTVIFSGWESGYGYLVKIDHHNGYVTYYGH
ASKLLVKKGDKVAKGQKIALVGSTGRATGPHLHFEVRKNGVPIDPMPFLNRR
>Mature_451_residues
GKVGDKSYKFFLGLLKTYKNNIIAFVVALSIGLSFIVYEEGFAYKITVDGETIGITKNIDEVKSFIEELHKKEKQKTGTD
IVLNQQIKFERVRVSNKELTDVHKIYANLENAMSFSCKAAAIIVDGKFVTALKNEEEANKVLEMLKNKYARDSDRTYFKE
DVKIEEKYIPPKYLVSFEEALKILQQPVKKAVTYTVKENDSLWSIARAHDMYIDDILKLNPGLTENLKPGQVIYLSSAVP
NVTVVTEKRIVYKEKIPFETKLTKDDKLYTNQSKVLVEGKKGLKEVTAVVVSYNGVEVSKEVKSENILEKPINKIVAVGS
RRISYVATGSFNYPARGTITSRFGQRWGRFHTGVDIAAPQGSPIYAADGGTVIFSGWESGYGYLVKIDHHNGYVTYYGHA
SKLLVKKGDKVAKGQKIALVGSTGRATGPHLHFEVRKNGVPIDPMPFLNRR

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=194, Percent_Identity=34.5360824742268, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87082297, Length=128, Percent_Identity=37.5, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87082174, Length=97, Percent_Identity=46.3917525773196, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1789099, Length=122, Percent_Identity=36.8852459016393, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 50699; Mature: 50568

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS51109 G5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVGDKSYKFFLGLLKTYKNNIIAFVVALSIGLSFIVYEEGFAYKITVDGETIGITKNI
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCEEEEEEECCEEEEEECCH
DEVKSFIEELHKKEKQKTGTDIVLNQQIKFERVRVSNKELTDVHKIYANLENAMSFSCKA
HHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEE
AAIIVDGKFVTALKNEEEANKVLEMLKNKYARDSDRTYFKEDVKIEEKYIPPKYLVSFEE
EEEEECCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEHHCCEEHHHCCCHHHHHHHHH
ALKILQQPVKKAVTYTVKENDSLWSIARAHDMYIDDILKLNPGLTENLKPGQVIYLSSAV
HHHHHHHHHHHHEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
PNVTVVTEKRIVYKEKIPFETKLTKDDKLYTNQSKVLVEGKKGLKEVTAVVVSYNGVEVS
CCEEEEECCEEEEECCCCCCEECCCCCCEEECCCEEEEECCCCHHHHEEEEEEECCEEEH
KEVKSENILEKPINKIVAVGSRRISYVATGSFNYPARGTITSRFGQRWGRFHTGVDIAAP
HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECC
QGSPIYAADGGTVIFSGWESGYGYLVKIDHHNGYVTYYGHASKLLVKKGDKVAKGQKIAL
CCCEEEEECCCEEEEECCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCEEEE
VGSTGRATGPHLHFEVRKNGVPIDPMPFLNRR
EECCCCCCCCEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
GKVGDKSYKFFLGLLKTYKNNIIAFVVALSIGLSFIVYEEGFAYKITVDGETIGITKNI
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCEEEEEEECCEEEEEECCH
DEVKSFIEELHKKEKQKTGTDIVLNQQIKFERVRVSNKELTDVHKIYANLENAMSFSCKA
HHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEE
AAIIVDGKFVTALKNEEEANKVLEMLKNKYARDSDRTYFKEDVKIEEKYIPPKYLVSFEE
EEEEECCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEHHCCEEHHHCCCHHHHHHHHH
ALKILQQPVKKAVTYTVKENDSLWSIARAHDMYIDDILKLNPGLTENLKPGQVIYLSSAV
HHHHHHHHHHHHEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
PNVTVVTEKRIVYKEKIPFETKLTKDDKLYTNQSKVLVEGKKGLKEVTAVVVSYNGVEVS
CCEEEEECCEEEEECCCCCCEECCCCCCEEECCCEEEEECCCCHHHHEEEEEEECCEEEH
KEVKSENILEKPINKIVAVGSRRISYVATGSFNYPARGTITSRFGQRWGRFHTGVDIAAP
HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECC
QGSPIYAADGGTVIFSGWESGYGYLVKIDHHNGYVTYYGHASKLLVKKGDKVAKGQKIAL
CCCEEEEECCCEEEEECCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCEEEE
VGSTGRATGPHLHFEVRKNGVPIDPMPFLNRR
EECCCCCCCCEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]