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The map label for this gene is ydcM [C]

Identifier: 167040902

GI number: 167040902

Start: 2296988

End: 2298187

Strand: Reverse

Name: ydcM [C]

Synonym: Teth514_2286

Alternate gene names: 167040902

Gene position: 2298187-2296988 (Counterclockwise)

Preceding gene: 167040903

Following gene: 167040901

Centisome position: 93.53

GC content: 29.08

Gene sequence:

>1200_bases
ATGGAAAAGGTAGTTAAAAGAGCTGAACAAATTCAGATAAATAGAAATCATGAAATGTGGAAATATTTTGATAAAATATG
TTTTGCTACAAAAAACTTATACAATTATGCCAATTATATTATAAGACAAGAATTTATAAACAATAATAAGTGGATAAGAT
ACAGGCAATTAAATAGAGAATTAAAGAACCACGAGACTTATAAAAACTTACCTGCACAAACAGCACAGCATACATTGAAA
CTGCTTGATAGAAATTGGAAATCATTTTTCAAAGCTATAAAAGAATGGGAAAAAGATAAAAGTAAATTTTCAGGCAGGCC
CAGATTACCAAAATATAAAAAGAAAAATGGTAGAGCAATTGCTATATTTACAAATCAACAATGCAAAATTAAAAGTGGTT
ATTTAACTTTTCCGAAAACAAATTTAAGACTAAAAACAATGGTAGAAGGCAATTTAAAAGAGGTGAGAGTAATCCCCAAA
GGAAATATTTATATTGTTGAAATAGTTTATGAAAGAGTACTAATAAATAAAACTTTCAAAAAACCTCAAAGGATAGCAGG
AATAGATTTAGGACTTGATAACTTTGTAACCTTAACAAATAACATAGGTATAAAGCCTATTGTTATTAACGGCAAAGTTA
TCAAGTCAATAAATCAGTATTATAATAAGAAAAAAGCAGAACTTATGAGTTATGTTGGCAGTAAAGGAACAAGTAGAAGA
ATAGAAAAACTTACTCTAAAAAGGAATAACAAAATAAAAGACTTTATGCATAAAGCAAGTAAATTTATAGTTAATTGGTG
TAAAGAACACGACATAGATACTATTGTCATTGGTTATAACAAAGGATGGAAGCAGGAAATAGAATTAGGAAAAGTAAATA
ATCAAAACTTTGTTGGAATTCCTTACTATCAATTTATTAACATGCTTCAGTACAAATGTGAGGAAGAAGGAATTAATTTA
ATTCTAGTAGAAGAAGGTTACACAAGTGGATGCAGTTTTCTTGATAGCGAAGAAGTATGTAAAGAGAACTATAATCCAAA
ACGCCGTATTACAAGAGGTTTATTTAAAAGCAATAAAGGCATTTTAATAAATGCTGATGTTAATGCTGCATATAATATCA
TGGTAAAAGTATTCCCCAACGCATTTGCAGAGGGGATAGAGGGCGTGGGGTTACATCCAGTTAGGCAAAATGTAGCCTAA

Upstream 100 bases:

>100_bases
AAATATTTGAAGAAATCGTAAATTTTATTCACTATTACAACATGAAGTTATACAGCAAAAGAAAAATTAAAAAAATAAAA
GAAATATTGGAGAATGGAAG

Downstream 100 bases:

>100_bases
CAAAGAATAGTGTTTAACAAAATTTTTAATAATTTTTTATATGTTAAACACTATTCATAACCTAAATACCTACTTTCTCA
TAAAAAAGTATTTATTGAAC

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: Neutral Protease; Transposase ORF_B; IS Element ISTsi3 OrfB Probably Transposase; Transposase Family; ISSoc6 OrfB Transposase; ISChy8 Transposase; IS Element ISDka2 OrfB; Transposase Family Protein; Transposase OrfB; Transposase IS; Transposase Orf_b; IS Element ISTsi2 OrfB Probably Transposase

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MEKVVKRAEQIQINRNHEMWKYFDKICFATKNLYNYANYIIRQEFINNNKWIRYRQLNRELKNHETYKNLPAQTAQHTLK
LLDRNWKSFFKAIKEWEKDKSKFSGRPRLPKYKKKNGRAIAIFTNQQCKIKSGYLTFPKTNLRLKTMVEGNLKEVRVIPK
GNIYIVEIVYERVLINKTFKKPQRIAGIDLGLDNFVTLTNNIGIKPIVINGKVIKSINQYYNKKKAELMSYVGSKGTSRR
IEKLTLKRNNKIKDFMHKASKFIVNWCKEHDIDTIVIGYNKGWKQEIELGKVNNQNFVGIPYYQFINMLQYKCEEEGINL
ILVEEGYTSGCSFLDSEEVCKENYNPKRRITRGLFKSNKGILINADVNAAYNIMVKVFPNAFAEGIEGVGLHPVRQNVA

Sequences:

>Translated_399_residues
MEKVVKRAEQIQINRNHEMWKYFDKICFATKNLYNYANYIIRQEFINNNKWIRYRQLNRELKNHETYKNLPAQTAQHTLK
LLDRNWKSFFKAIKEWEKDKSKFSGRPRLPKYKKKNGRAIAIFTNQQCKIKSGYLTFPKTNLRLKTMVEGNLKEVRVIPK
GNIYIVEIVYERVLINKTFKKPQRIAGIDLGLDNFVTLTNNIGIKPIVINGKVIKSINQYYNKKKAELMSYVGSKGTSRR
IEKLTLKRNNKIKDFMHKASKFIVNWCKEHDIDTIVIGYNKGWKQEIELGKVNNQNFVGIPYYQFINMLQYKCEEEGINL
ILVEEGYTSGCSFLDSEEVCKENYNPKRRITRGLFKSNKGILINADVNAAYNIMVKVFPNAFAEGIEGVGLHPVRQNVA
>Mature_399_residues
MEKVVKRAEQIQINRNHEMWKYFDKICFATKNLYNYANYIIRQEFINNNKWIRYRQLNRELKNHETYKNLPAQTAQHTLK
LLDRNWKSFFKAIKEWEKDKSKFSGRPRLPKYKKKNGRAIAIFTNQQCKIKSGYLTFPKTNLRLKTMVEGNLKEVRVIPK
GNIYIVEIVYERVLINKTFKKPQRIAGIDLGLDNFVTLTNNIGIKPIVINGKVIKSINQYYNKKKAELMSYVGSKGTSRR
IEKLTLKRNNKIKDFMHKASKFIVNWCKEHDIDTIVIGYNKGWKQEIELGKVNNQNFVGIPYYQFINMLQYKCEEEGINL
ILVEEGYTSGCSFLDSEEVCKENYNPKRRITRGLFKSNKGILINADVNAAYNIMVKVFPNAFAEGIEGVGLHPVRQNVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46762; Mature: 46762

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKVVKRAEQIQINRNHEMWKYFDKICFATKNLYNYANYIIRQEFINNNKWIRYRQLNRE
CCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
LKNHETYKNLPAQTAQHTLKLLDRNWKSFFKAIKEWEKDKSKFSGRPRLPKYKKKNGRAI
HHCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE
AIFTNQQCKIKSGYLTFPKTNLRLKTMVEGNLKEVRVIPKGNIYIVEIVYERVLINKTFK
EEEECCCEEEECCEEECCCCCCEEEEEECCCCEEEEEECCCCEEEEHHHHHHHHHHHHHC
KPQRIAGIDLGLDNFVTLTNNIGIKPIVINGKVIKSINQYYNKKKAELMSYVGSKGTSRR
CCHHHEEEEECCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
IEKLTLKRNNKIKDFMHKASKFIVNWCKEHDIDTIVIGYNKGWKQEIELGKVNNQNFVGI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHEEEECCCCCEEEC
PYYQFINMLQYKCEEEGINLILVEEGYTSGCSFLDSEEVCKENYNPKRRITRGLFKSNKG
CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCC
ILINADVNAAYNIMVKVFPNAFAEGIEGVGLHPVRQNVA
EEEECCCCCEEEEEEEECCHHHHCCCCCCCCCHHHHCCC
>Mature Secondary Structure
MEKVVKRAEQIQINRNHEMWKYFDKICFATKNLYNYANYIIRQEFINNNKWIRYRQLNRE
CCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
LKNHETYKNLPAQTAQHTLKLLDRNWKSFFKAIKEWEKDKSKFSGRPRLPKYKKKNGRAI
HHCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE
AIFTNQQCKIKSGYLTFPKTNLRLKTMVEGNLKEVRVIPKGNIYIVEIVYERVLINKTFK
EEEECCCEEEECCEEECCCCCCEEEEEECCCCEEEEEECCCCEEEEHHHHHHHHHHHHHC
KPQRIAGIDLGLDNFVTLTNNIGIKPIVINGKVIKSINQYYNKKKAELMSYVGSKGTSRR
CCHHHEEEEECCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
IEKLTLKRNNKIKDFMHKASKFIVNWCKEHDIDTIVIGYNKGWKQEIELGKVNNQNFVGI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHEEEECCCCCEEEC
PYYQFINMLQYKCEEEGINLILVEEGYTSGCSFLDSEEVCKENYNPKRRITRGLFKSNKG
CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCC
ILINADVNAAYNIMVKVFPNAFAEGIEGVGLHPVRQNVA
EEEECCCCCEEEEEEEECCHHHHCCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA