Click here to switch to the map view.

The map label for this gene is gcdB [H]

Identifier: 167040481

GI number: 167040481

Start: 1867131

End: 1868246

Strand: Reverse

Name: gcdB [H]

Synonym: Teth514_1850

Alternate gene names: 167040481

Gene position: 1868246-1867131 (Counterclockwise)

Preceding gene: 167040482

Following gene: 167040480

Centisome position: 76.03

GC content: 49.01

Gene sequence:

>1116_bases
TTGTTCGAGGCAATAATAAACTTTCTAAAAACTACTGGCTACTTTAATGTAACGCTATCCCAGCTCATAATGATAATCAT
AGCCTTTGTACTCATGTATCTTGCAATAGTAAAAAAATATGAGCCGCTGCTTTTAGTGCCCATAAGCTTTGGCATGTTTT
TAGCCAACATACCTGAAGCCGGCCTAATGGAGGAGGGGGGATTTTTATACTGGATATACCAGGGAGTAAAACTCGGCATA
TACCCGCCTCTTATATTCATGGGGGTTGGGGCTATGACCGACTTTGGTCCCTTAATATCAAACCCCAAGAGCCTCCTTTT
GGGAGCTGCCGCCCAGCTCGGCATATTCATCACATTCCTTGGAGCAAGACTTTTGGGGTTTGATGCAAAAGAAGCCTCCT
CTATAGGCATAATAGGCGGGGCTGATGGCCCCACGGCCATATTTGTGACAAGCAAGCTTGCCCCTCATCTTCTGGGAGCC
GTGGCGGTAGCCGCCTACTCCTACATGGCTCTAGTACCTATAATCCAGCCCTCTATAATGCGCCTTCTGACCACCAAAAA
AGAGCGCACCGTAGTAATGGAACAATTAAGGCCCGTATCAAAGACCGAAAAAATAATATTCCCGATAATAATCACGGTAC
TGGCGAGCTTTTTAGTGCCCCCTGCCACGCCGCTCATCGGCTCCCTCATGTTGGGCAATCTCTTCAGAGAATCCGGCGTA
GTAGACAGGCTTTCCAAGGCTGTCCAAAACGAATTGATGAACATACTAACCATATTCATAGGGCTGAGCGTAGGGGCTAC
AGCCAGTGGAGACAATTTCCTGAGGCTCGAGACCATAGAGATAATAATTCTAGGGTTGATAGCCTTTGCAGGCGGTACTG
CTGGGGGAGTGCTTTTTGGCAAGCTGATGTATCTGCTCTCTGGTGGAAAGGTAAACCCTTTGATAGGCTCTGCCGGAGTG
TCGGCGGTACCCATGGCTGCTCGTGTGTCCCAGAAAGTGGCTCAGGAAGAGATGCCTGGTAACTTCGTACTGATGCACGC
CATGGGTCCCAACGTGGCAGGAGTCATAGGCTCTGCCATCGCCGCAGGCGTGTTGCTTTCACTGTATGGTGGATAG

Upstream 100 bases:

>100_bases
GAATCAAGGCTTAATCTAATGAAACACCAACAACACTTAAGAAGCCTCCGCTGACACTGTATAAAGTAAAACCAAAAAAA
TAAAGAAGAGGTGAAACCAA

Downstream 100 bases:

>100_bases
TAAAAAGCCGCTTCAATTTTTGAAGCAGTTTTTGTGACGTTGGGGCAGGATATTACAGTTTCCTGGGTCACATAGGAGGA
GATGACTTTGTAGCGATTGT

Product: sodium ion-translocating decarboxylase subunit beta

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MFEAIINFLKTTGYFNVTLSQLIMIIIAFVLMYLAIVKKYEPLLLVPISFGMFLANIPEAGLMEEGGFLYWIYQGVKLGI
YPPLIFMGVGAMTDFGPLISNPKSLLLGAAAQLGIFITFLGARLLGFDAKEASSIGIIGGADGPTAIFVTSKLAPHLLGA
VAVAAYSYMALVPIIQPSIMRLLTTKKERTVVMEQLRPVSKTEKIIFPIIITVLASFLVPPATPLIGSLMLGNLFRESGV
VDRLSKAVQNELMNILTIFIGLSVGATASGDNFLRLETIEIIILGLIAFAGGTAGGVLFGKLMYLLSGGKVNPLIGSAGV
SAVPMAARVSQKVAQEEMPGNFVLMHAMGPNVAGVIGSAIAAGVLLSLYGG

Sequences:

>Translated_371_residues
MFEAIINFLKTTGYFNVTLSQLIMIIIAFVLMYLAIVKKYEPLLLVPISFGMFLANIPEAGLMEEGGFLYWIYQGVKLGI
YPPLIFMGVGAMTDFGPLISNPKSLLLGAAAQLGIFITFLGARLLGFDAKEASSIGIIGGADGPTAIFVTSKLAPHLLGA
VAVAAYSYMALVPIIQPSIMRLLTTKKERTVVMEQLRPVSKTEKIIFPIIITVLASFLVPPATPLIGSLMLGNLFRESGV
VDRLSKAVQNELMNILTIFIGLSVGATASGDNFLRLETIEIIILGLIAFAGGTAGGVLFGKLMYLLSGGKVNPLIGSAGV
SAVPMAARVSQKVAQEEMPGNFVLMHAMGPNVAGVIGSAIAAGVLLSLYGG
>Mature_371_residues
MFEAIINFLKTTGYFNVTLSQLIMIIIAFVLMYLAIVKKYEPLLLVPISFGMFLANIPEAGLMEEGGFLYWIYQGVKLGI
YPPLIFMGVGAMTDFGPLISNPKSLLLGAAAQLGIFITFLGARLLGFDAKEASSIGIIGGADGPTAIFVTSKLAPHLLGA
VAVAAYSYMALVPIIQPSIMRLLTTKKERTVVMEQLRPVSKTEKIIFPIIITVLASFLVPPATPLIGSLMLGNLFRESGV
VDRLSKAVQNELMNILTIFIGLSVGATASGDNFLRLETIEIIILGLIAFAGGTAGGVLFGKLMYLLSGGKVNPLIGSAGV
SAVPMAARVSQKVAQEEMPGNFVLMHAMGPNVAGVIGSAIAAGVLLSLYGG

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 39130; Mature: 39130

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEAIINFLKTTGYFNVTLSQLIMIIIAFVLMYLAIVKKYEPLLLVPISFGMFLANIPEA
CHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCC
GLMEEGGFLYWIYQGVKLGIYPPLIFMGVGAMTDFGPLISNPKSLLLGAAAQLGIFITFL
CCCCCCCEEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
GARLLGFDAKEASSIGIIGGADGPTAIFVTSKLAPHLLGAVAVAAYSYMALVPIIQPSIM
HHHHHCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLLTTKKERTVVMEQLRPVSKTEKIIFPIIITVLASFLVPPATPLIGSLMLGNLFRESGV
HHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
VDRLSKAVQNELMNILTIFIGLSVGATASGDNFLRLETIEIIILGLIAFAGGTAGGVLFG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHH
KLMYLLSGGKVNPLIGSAGVSAVPMAARVSQKVAQEEMPGNFVLMHAMGPNVAGVIGSAI
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
AAGVLLSLYGG
HHHHHHHHCCC
>Mature Secondary Structure
MFEAIINFLKTTGYFNVTLSQLIMIIIAFVLMYLAIVKKYEPLLLVPISFGMFLANIPEA
CHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCC
GLMEEGGFLYWIYQGVKLGIYPPLIFMGVGAMTDFGPLISNPKSLLLGAAAQLGIFITFL
CCCCCCCEEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
GARLLGFDAKEASSIGIIGGADGPTAIFVTSKLAPHLLGAVAVAAYSYMALVPIIQPSIM
HHHHHCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLLTTKKERTVVMEQLRPVSKTEKIIFPIIITVLASFLVPPATPLIGSLMLGNLFRESGV
HHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
VDRLSKAVQNELMNILTIFIGLSVGATASGDNFLRLETIEIIILGLIAFAGGTAGGVLFG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHH
KLMYLLSGGKVNPLIGSAGVSAVPMAARVSQKVAQEEMPGNFVLMHAMGPNVAGVIGSAI
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
AAGVLLSLYGG
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]