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The map label for this gene is ydeM [C]

Identifier: 167040010

GI number: 167040010

Start: 1409674

End: 1411038

Strand: Direct

Name: ydeM [C]

Synonym: Teth514_1369

Alternate gene names: 167040010

Gene position: 1409674-1411038 (Clockwise)

Preceding gene: 167040008

Following gene: 167040011

Centisome position: 57.37

GC content: 27.11

Gene sequence:

>1365_bases
ATGAAATTTACAAAATTTTACTCTTTTTTAGATGTAAACCAACATCATTATTTGTTAAATACCATAAATTCTGCGTTGAT
AGAGCTGGATGATGAACACTACGAGAAACTTAAAAAAGCTTTTTATCTAAATAATCCAGATGTCATTGAAACCGATGAAA
AAAATGTACTAGCAGACAATGGTTTTTTAATTGAAGACACAATAGATGAGTACTTGAGTATTCGAAACAAGTATCTTTTC
TCTAAGTATAACGTTTCTTATAATTTGAAGTTAGATATTGCTGTTACTAATAAATGTAATTTTTCTTGTGTATATTGTTA
CGAAAATTTTTCTGATAGTAAGATGTCATTTGAACTTAATGATGAAATAAAAAGCAAATTCTGTAATAATTTGAGAAAAT
ATTTAAATCATATGATAATGAATTATAAAGTAAAATCGCTTCAAGTAACTTGGTATGGTGGTGAACCTTCACTTGAATGG
TCCTTAATCTTTACATTAAATAATGAGTTTATAAAATTAGGAAATGAACATCATATACGATATAAAAATGTGATTGTTAC
TAACGGTTTTTTAATTGACGAAAGTATAGCTACTAAATTATCGCAACAAAACACAGAATATGTACAAATAACTGTTGATG
GACCCGAAATAATTCATGATAAGAGAAGATATCTTGCTAATAAAAAAGGGACCTATTCAAAGATTTTAGATGGGATATAC
AATCTTCTGAAAAACGGAGTAAATACAGTTGTAAGAGTAAATATTGATAAAGGTAATATAGATTATATTGAGATATTAAT
AGAGGAATTATATAGTAGATTTCAAACGTTTGTAGGAAAAGGTTTGCTTTCACTTGATTTAGCAAGAGTATTTGGGCATC
GAGATTCTTTTTCACTTTCGGAGTTTTATAGCAAACGTAAAATTATTATGAAAAAAGCAGTAAAATTAGGATTTATTAAC
CCATCACTTGAAAGTGGTGGTGTAAGAGCATATTGTAATGCAGAAACTGATGTACTTAGTAATCTTACTATTGATGTTTT
TGGGAATATATACAAATGTTGGAATTATGTTTTTGTCAAGGATTCTAGCTATTGTACTTTAGATGAGCTTATTGAAAATA
ATTTTGAAATATTACCTCAAAACAAAAATAGATTGGATTACGTGGAAAAAGTGTCACTTCTAAATGCTAACAATGGGCAA
TGCTTAAAATGTAAATATATTACATACTGTGCTGGTCTATGTCCAGATGTGAGAAAAAAAATAGCAAACGGAGAAGAAGA
AAATATTTATAAAAATGAAAAATGCAAATCAATAGTAGAAGATTTAATAAAAGAGCAGATTAAATTAATTTATAATACAG
ACTAA

Upstream 100 bases:

>100_bases
CTTCTCTATAATCTTTTCCCTACCAAGTATTGTAAGGTTTAATATACCTCAAAATTAGAGGTTTATCTGACATAATTTAT
AGACTTTAGGGGTGTGAAAA

Downstream 100 bases:

>100_bases
ATAAAGGGGTTTTATTATGGAAGCAATAAAAAAGTTTAAAGTTTTGTGGGAGATAATTCCTAAAAAAGATAAAATTTATT
ATATTGCTTACACCATAATT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Arylsulfatase Regulator; Transcriptional Regulator; Metallo Cofactor Biosynthesis Protein; Arylsulfatase Regulator Fe-S Oxidoreductase; Arylsulfatase Regulatory Protein; AstB/ChuR-Related Protein; Radical Sam Domain Protein; Radical SAM Family Protein; Arylsulfatase-Activating AtsB; Elongator /MiaB/NifB; Transcriptional Regulatory Protein; Regulatory Protein; Heme Biosynthesis Related Protein

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MKFTKFYSFLDVNQHHYLLNTINSALIELDDEHYEKLKKAFYLNNPDVIETDEKNVLADNGFLIEDTIDEYLSIRNKYLF
SKYNVSYNLKLDIAVTNKCNFSCVYCYENFSDSKMSFELNDEIKSKFCNNLRKYLNHMIMNYKVKSLQVTWYGGEPSLEW
SLIFTLNNEFIKLGNEHHIRYKNVIVTNGFLIDESIATKLSQQNTEYVQITVDGPEIIHDKRRYLANKKGTYSKILDGIY
NLLKNGVNTVVRVNIDKGNIDYIEILIEELYSRFQTFVGKGLLSLDLARVFGHRDSFSLSEFYSKRKIIMKKAVKLGFIN
PSLESGGVRAYCNAETDVLSNLTIDVFGNIYKCWNYVFVKDSSYCTLDELIENNFEILPQNKNRLDYVEKVSLLNANNGQ
CLKCKYITYCAGLCPDVRKKIANGEEENIYKNEKCKSIVEDLIKEQIKLIYNTD

Sequences:

>Translated_454_residues
MKFTKFYSFLDVNQHHYLLNTINSALIELDDEHYEKLKKAFYLNNPDVIETDEKNVLADNGFLIEDTIDEYLSIRNKYLF
SKYNVSYNLKLDIAVTNKCNFSCVYCYENFSDSKMSFELNDEIKSKFCNNLRKYLNHMIMNYKVKSLQVTWYGGEPSLEW
SLIFTLNNEFIKLGNEHHIRYKNVIVTNGFLIDESIATKLSQQNTEYVQITVDGPEIIHDKRRYLANKKGTYSKILDGIY
NLLKNGVNTVVRVNIDKGNIDYIEILIEELYSRFQTFVGKGLLSLDLARVFGHRDSFSLSEFYSKRKIIMKKAVKLGFIN
PSLESGGVRAYCNAETDVLSNLTIDVFGNIYKCWNYVFVKDSSYCTLDELIENNFEILPQNKNRLDYVEKVSLLNANNGQ
CLKCKYITYCAGLCPDVRKKIANGEEENIYKNEKCKSIVEDLIKEQIKLIYNTD
>Mature_454_residues
MKFTKFYSFLDVNQHHYLLNTINSALIELDDEHYEKLKKAFYLNNPDVIETDEKNVLADNGFLIEDTIDEYLSIRNKYLF
SKYNVSYNLKLDIAVTNKCNFSCVYCYENFSDSKMSFELNDEIKSKFCNNLRKYLNHMIMNYKVKSLQVTWYGGEPSLEW
SLIFTLNNEFIKLGNEHHIRYKNVIVTNGFLIDESIATKLSQQNTEYVQITVDGPEIIHDKRRYLANKKGTYSKILDGIY
NLLKNGVNTVVRVNIDKGNIDYIEILIEELYSRFQTFVGKGLLSLDLARVFGHRDSFSLSEFYSKRKIIMKKAVKLGFIN
PSLESGGVRAYCNAETDVLSNLTIDVFGNIYKCWNYVFVKDSSYCTLDELIENNFEILPQNKNRLDYVEKVSLLNANNGQ
CLKCKYITYCAGLCPDVRKKIANGEEENIYKNEKCKSIVEDLIKEQIKLIYNTD

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081923, Length=363, Percent_Identity=24.2424242424242, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52856; Mature: 52856

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTKFYSFLDVNQHHYLLNTINSALIELDDEHYEKLKKAFYLNNPDVIETDEKNVLADN
CCHHHHHHHHCCCCCHHHHHHHHHHHEECCHHHHHHHHHHEECCCCCEEECCCCCEEECC
GFLIEDTIDEYLSIRNKYLFSKYNVSYNLKLDIAVTNKCNFSCVYCYENFSDSKMSFELN
CEEEHHHHHHHHHHHHHHEEEEECEEEEEEEEEEEECCCCEEEEEEECCCCCCEEEEEEC
DEIKSKFCNNLRKYLNHMIMNYKVKSLQVTWYGGEPSLEWSLIFTLNNEFIKLGNEHHIR
HHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCCCEEEEEEEEECCCEEECCCCCCEE
YKNVIVTNGFLIDESIATKLSQQNTEYVQITVDGPEIIHDKRRYLANKKGTYSKILDGIY
EEEEEEECCEEECHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHH
NLLKNGVNTVVRVNIDKGNIDYIEILIEELYSRFQTFVGKGLLSLDLARVFGHRDSFSLS
HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHH
EFYSKRKIIMKKAVKLGFINPSLESGGVRAYCNAETDVLSNLTIDVFGNIYKCWNYVFVK
HHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCHHHHHCCCHHHHHCHHHHEEEEEEE
DSSYCTLDELIENNFEILPQNKNRLDYVEKVSLLNANNGQCLKCKYITYCAGLCPDVRKK
CCCCCCHHHHHCCCCEECCCCCCCHHHHHHHHEEECCCCCEEEEEHHHHHHHCCHHHHHH
IANGEEENIYKNEKCKSIVEDLIKEQIKLIYNTD
HCCCCHHCCCCCHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MKFTKFYSFLDVNQHHYLLNTINSALIELDDEHYEKLKKAFYLNNPDVIETDEKNVLADN
CCHHHHHHHHCCCCCHHHHHHHHHHHEECCHHHHHHHHHHEECCCCCEEECCCCCEEECC
GFLIEDTIDEYLSIRNKYLFSKYNVSYNLKLDIAVTNKCNFSCVYCYENFSDSKMSFELN
CEEEHHHHHHHHHHHHHHEEEEECEEEEEEEEEEEECCCCEEEEEEECCCCCCEEEEEEC
DEIKSKFCNNLRKYLNHMIMNYKVKSLQVTWYGGEPSLEWSLIFTLNNEFIKLGNEHHIR
HHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCCCEEEEEEEEECCCEEECCCCCCEE
YKNVIVTNGFLIDESIATKLSQQNTEYVQITVDGPEIIHDKRRYLANKKGTYSKILDGIY
EEEEEEECCEEECHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHH
NLLKNGVNTVVRVNIDKGNIDYIEILIEELYSRFQTFVGKGLLSLDLARVFGHRDSFSLS
HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHH
EFYSKRKIIMKKAVKLGFINPSLESGGVRAYCNAETDVLSNLTIDVFGNIYKCWNYVFVK
HHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCHHHHHCCCHHHHHCHHHHEEEEEEE
DSSYCTLDELIENNFEILPQNKNRLDYVEKVSLLNANNGQCLKCKYITYCAGLCPDVRKK
CCCCCCHHHHHCCCCEECCCCCCCHHHHHHHHEEECCCCCEEEEEHHHHHHHCCHHHHHH
IANGEEENIYKNEKCKSIVEDLIKEQIKLIYNTD
HCCCCHHCCCCCHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA