Click here to switch to the map view.

The map label for this gene is ydeM [C]

Identifier: 167040005

GI number: 167040005

Start: 1403082

End: 1404464

Strand: Direct

Name: ydeM [C]

Synonym: Teth514_1364

Alternate gene names: 167040005

Gene position: 1403082-1404464 (Clockwise)

Preceding gene: 167040004

Following gene: 167040006

Centisome position: 57.1

GC content: 29.5

Gene sequence:

>1383_bases
ATGTATTATGAAAAGGCTAATGTTTATATTACTAATGACAAGAAAATATTATTTGATTTGAATAAATATGATATATACGA
GATTGATGATGAAACTTTCAACTTATTTGAAGAAATATATTTTGAGGTAGAAAAAGGAGTTTTATTTGATGAAAACATTA
ATGAAAGCACTCCTAAAAAGAAAGAAATATATGAACTGTTGTTTAGATTTCGGAATTATAACAGTAGTGGAGAAAGAGAG
ACTACCCAGATAAGGATCCACACGAGCAATGAGTGTAACCTTAAGTGCAAGTACTGTTATGCAAACCATGGGGACTATAA
CCAAGGGCAAGCTATAATGACAGAAGAAATAGCGGAAAAAGTAGCTGATTTTATAAAGTTAAATTTTCCAAAAGTTAAAG
TTATAGTATTTTTTGGAGGAGAACCTTTACTTGGATTTAAAGCTATAGGAAAGATATGTGAAAAAATGGGAAAAGAAACA
CATTACATTGTTAACACTAATCTTACGATTTTAAATGAAGAAATAATAAAACTAATTAACGAGTATAGTATAAATGTTAC
AGGAAGCATAGATGGTCCAAAGGAAATACATGATCTTAATAGGGTATATAAAAGGAACGGAAGAGGAAGCTTTGATATTG
TTAGGCACAATGCTAGGAAACTTATGGAGGAAACAGAATATTTCGATACGGTGGATGCCGTATATACTCTTCCAGCTCAA
AAAAAGTATTCTAAACATCAGATCGCAGAGTACCTTTACAAAGAATTTAAAGTAAAATATATTGCTATTGGCGATGTGAT
TACAGAAGATGAAACGCTTAAAGTAGAAAAGGAAAAGGTCCAAGATATAGAAAAAGAAGTTGAATATGTGTTTGACAATA
TAATCGCTGATAGGTTTATTTATCTAAATGAATACTCTCTTCCATTAATATCATTTTTCTCCAAATCATATAATGATAAT
TTTTGTACTACAGGTATCTCAAATATTACGATAACAGCCAGCGGGGATATATGGCCATGCCAATTGTTCATTGGGAGAAA
TGAATATCATATGGGGAAAATAGATTTTAACGACATTACAAACTTCGATTTTAAAAAATTCAATAAGGTGTCAGATAATT
TTTACAAAATAAAGAAATCTAGATTTTCAGAATGTCAGAAATGTATTGCTAGATATTGGTGTGTAAAGTGCTTGGGAGCT
ATACAAAAAAATAACTTAGAAGAAAATATCATAACAAGTGAGTGTATAAATATACGGAAAATAACAGAAATAGTCTTAGA
AAAATTAGGATATTACATTTTAAATGGCAATTTTGAAAAACTATACGGCAACCTAAGGAAAACAACAAAAGGAATTGAGG
ATAAATTTTTAAATGTTGTGTGA

Upstream 100 bases:

>100_bases
TAAGTAAAAATTAGGTGAGATGTGTAGTTTGAAAGACTACATATCTCACCCTCCTTTTTTCCTTGATCATAATTGGATTA
TAAGAAGGAGCGTGTTTTCG

Downstream 100 bases:

>100_bases
AAAGGAGTGAAAGACCTGTATGAGAGAATTTCTATTCAAGTATAAAAAAGAGTTTGTGCTTGCAGTATTTTTCTTAGTAG
CTTCTGTATTGATAAATATT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MYYEKANVYITNDKKILFDLNKYDIYEIDDETFNLFEEIYFEVEKGVLFDENINESTPKKKEIYELLFRFRNYNSSGERE
TTQIRIHTSNECNLKCKYCYANHGDYNQGQAIMTEEIAEKVADFIKLNFPKVKVIVFFGGEPLLGFKAIGKICEKMGKET
HYIVNTNLTILNEEIIKLINEYSINVTGSIDGPKEIHDLNRVYKRNGRGSFDIVRHNARKLMEETEYFDTVDAVYTLPAQ
KKYSKHQIAEYLYKEFKVKYIAIGDVITEDETLKVEKEKVQDIEKEVEYVFDNIIADRFIYLNEYSLPLISFFSKSYNDN
FCTTGISNITITASGDIWPCQLFIGRNEYHMGKIDFNDITNFDFKKFNKVSDNFYKIKKSRFSECQKCIARYWCVKCLGA
IQKNNLEENIITSECINIRKITEIVLEKLGYYILNGNFEKLYGNLRKTTKGIEDKFLNVV

Sequences:

>Translated_460_residues
MYYEKANVYITNDKKILFDLNKYDIYEIDDETFNLFEEIYFEVEKGVLFDENINESTPKKKEIYELLFRFRNYNSSGERE
TTQIRIHTSNECNLKCKYCYANHGDYNQGQAIMTEEIAEKVADFIKLNFPKVKVIVFFGGEPLLGFKAIGKICEKMGKET
HYIVNTNLTILNEEIIKLINEYSINVTGSIDGPKEIHDLNRVYKRNGRGSFDIVRHNARKLMEETEYFDTVDAVYTLPAQ
KKYSKHQIAEYLYKEFKVKYIAIGDVITEDETLKVEKEKVQDIEKEVEYVFDNIIADRFIYLNEYSLPLISFFSKSYNDN
FCTTGISNITITASGDIWPCQLFIGRNEYHMGKIDFNDITNFDFKKFNKVSDNFYKIKKSRFSECQKCIARYWCVKCLGA
IQKNNLEENIITSECINIRKITEIVLEKLGYYILNGNFEKLYGNLRKTTKGIEDKFLNVV
>Mature_460_residues
MYYEKANVYITNDKKILFDLNKYDIYEIDDETFNLFEEIYFEVEKGVLFDENINESTPKKKEIYELLFRFRNYNSSGERE
TTQIRIHTSNECNLKCKYCYANHGDYNQGQAIMTEEIAEKVADFIKLNFPKVKVIVFFGGEPLLGFKAIGKICEKMGKET
HYIVNTNLTILNEEIIKLINEYSINVTGSIDGPKEIHDLNRVYKRNGRGSFDIVRHNARKLMEETEYFDTVDAVYTLPAQ
KKYSKHQIAEYLYKEFKVKYIAIGDVITEDETLKVEKEKVQDIEKEVEYVFDNIIADRFIYLNEYSLPLISFFSKSYNDN
FCTTGISNITITASGDIWPCQLFIGRNEYHMGKIDFNDITNFDFKKFNKVSDNFYKIKKSRFSECQKCIARYWCVKCLGA
IQKNNLEENIITSECINIRKITEIVLEKLGYYILNGNFEKLYGNLRKTTKGIEDKFLNVV

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 54046; Mature: 54046

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYEKANVYITNDKKILFDLNKYDIYEIDDETFNLFEEIYFEVEKGVLFDENINESTPKK
CCEEEEEEEEECCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCEEECCCCCCCCCCH
KEIYELLFRFRNYNSSGERETTQIRIHTSNECNLKCKYCYANHGDYNQGQAIMTEEIAEK
HHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
VADFIKLNFPKVKVIVFFGGEPLLGFKAIGKICEKMGKETHYIVNTNLTILNEEIIKLIN
HHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEECHHHHHHHH
EYSINVTGSIDGPKEIHDLNRVYKRNGRGSFDIVRHNARKLMEETEYFDTVDAVYTLPAQ
HCCEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCH
KKYSKHQIAEYLYKEFKVKYIAIGDVITEDETLKVEKEKVQDIEKEVEYVFDNIIADRFI
HHHHHHHHHHHHHHHHCEEEEEECCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHEE
YLNEYSLPLISFFSKSYNDNFCTTGISNITITASGDIWPCQLFIGRNEYHMGKIDFNDIT
EEECCCCHHHHHHHHCCCCCCEECCCCEEEEEECCCEEEEEEEEECCCEEECEEECCCCC
NFDFKKFNKVSDNFYKIKKSRFSECQKCIARYWCVKCLGAIQKNNLEENIITSECINIRK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ITEIVLEKLGYYILNGNFEKLYGNLRKTTKGIEDKFLNVV
HHHHHHHHCCEEEECCCHHHHHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure
MYYEKANVYITNDKKILFDLNKYDIYEIDDETFNLFEEIYFEVEKGVLFDENINESTPKK
CCEEEEEEEEECCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCEEECCCCCCCCCCH
KEIYELLFRFRNYNSSGERETTQIRIHTSNECNLKCKYCYANHGDYNQGQAIMTEEIAEK
HHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
VADFIKLNFPKVKVIVFFGGEPLLGFKAIGKICEKMGKETHYIVNTNLTILNEEIIKLIN
HHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEECHHHHHHHH
EYSINVTGSIDGPKEIHDLNRVYKRNGRGSFDIVRHNARKLMEETEYFDTVDAVYTLPAQ
HCCEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCH
KKYSKHQIAEYLYKEFKVKYIAIGDVITEDETLKVEKEKVQDIEKEVEYVFDNIIADRFI
HHHHHHHHHHHHHHHHCEEEEEECCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHEE
YLNEYSLPLISFFSKSYNDNFCTTGISNITITASGDIWPCQLFIGRNEYHMGKIDFNDIT
EEECCCCHHHHHHHHCCCCCCEECCCCEEEEEECCCEEEEEEEEECCCEEECEEECCCCC
NFDFKKFNKVSDNFYKIKKSRFSECQKCIARYWCVKCLGAIQKNNLEENIITSECINIRK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ITEIVLEKLGYYILNGNFEKLYGNLRKTTKGIEDKFLNVV
HHHHHHHHCCEEEECCCHHHHHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]