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The map label for this gene is smpB [H]

Identifier: 167039995

GI number: 167039995

Start: 1392216

End: 1392686

Strand: Direct

Name: smpB [H]

Synonym: Teth514_1354

Alternate gene names: 167039995

Gene position: 1392216-1392686 (Clockwise)

Preceding gene: 167039994

Following gene: 167039996

Centisome position: 56.66

GC content: 31.42

Gene sequence:

>471_bases
TTGGCGAAGGAAGAAATTAAAATAATCGCTCAAAACAAAAAAGCTTACCATGATTACTTCATTGAAGAAACTTATGAAGC
AGGAATAGTGCTTAGTGGAACTGAAGTTAAATCTATTAGGATGGGGAAAGTCAATTTAAAAGATAGCTTTGCAAGAGTTG
AAAACAACGAAGTTTATCTTTATAATATGCATATAAGTCCTTATGAAAAAGGCAATATATTTAATAAAGACCCCTTAAGG
ACTAGAAAATTACTTCTCAATAGACATGAGATTAATAAACTAATTGGTTATGTGACAAGGAAGGGTTACACTTTAATTCC
TACAAAGCTTTATTTAAAGCGAGGCCTTGTCAAAGTCGAATTAGCTGTAGCGAGAGGTAAAAAACTCTACGATAAGAGAG
AAGATATTGCGAGAAGAGATGCAAAAAGAGAATTAGAAAAACACTTTAAAGAAAAACAATTAGGCATATAA

Upstream 100 bases:

>100_bases
TGACACTATTTAAAAATGTGTTATAATATAATAGCGATGAGGGTGCCCTATTTGTGACACACAAGTAGGGCAATTTTCTC
CTAAAGAGGGTGTTTAAAAT

Downstream 100 bases:

>100_bases
CATGGGGGTGTACTGGTTTCGACGGGGGCAGTCGAGGTAAAAGTAGCGAGCCGAGTTGTCCGCCAGCTCGTAAAAACGGT
GGAGTAAAAATAAACGCAGA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MAKEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYLYNMHISPYEKGNIFNKDPLR
TRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLKRGLVKVELAVARGKKLYDKREDIARRDAKRELEKHFKEKQLGI

Sequences:

>Translated_156_residues
MAKEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYLYNMHISPYEKGNIFNKDPLR
TRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLKRGLVKVELAVARGKKLYDKREDIARRDAKRELEKHFKEKQLGI
>Mature_155_residues
AKEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYLYNMHISPYEKGNIFNKDPLRT
RKLLLNRHEINKLIGYVTRKGYTLIPTKLYLKRGLVKVELAVARGKKLYDKREDIARRDAKRELEKHFKEKQLGI

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=133, Percent_Identity=48.1203007518797, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 18359; Mature: 18228

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYL
CCCCCEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCHHHHEECCCEEEE
YNMHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLKRGLVKVE
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHCCCEEEE
LAVARGKKLYDKREDIARRDAKRELEKHFKEKQLGI
EEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYL
CCCCEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCHHHHEECCCEEEE
YNMHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLKRGLVKVE
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHCCCEEEE
LAVARGKKLYDKREDIARRDAKRELEKHFKEKQLGI
EEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA