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The map label for this gene is ybeY [C]

Identifier: 167039983

GI number: 167039983

Start: 1379484

End: 1379963

Strand: Direct

Name: ybeY [C]

Synonym: Teth514_1342

Alternate gene names: 167039983

Gene position: 1379484-1379963 (Clockwise)

Preceding gene: 167039982

Following gene: 167039984

Centisome position: 56.14

GC content: 33.54

Gene sequence:

>480_bases
ATGAACATTTTGATAGACAACAGACAAGATAAAGTTGATGCAATAAATTTGGAAGAATTGGTGGAAAAAGTTATAAAAAC
AGTATTAGAGGTAGAAGAGGTTATTGATAATGTTGAAGTAAGTGTGTCTTTTGTGGATAATGAGGAAATTAGAAAATTAA
ATAAATATTATAGAGGTATAGATAAGCCGACGGATGTTTTGTCATTTCCTTTAGCAGAGTTTGAAGATACTTATGGGGAA
GTTGAGGAAATAGAGGAAGATTCAGAAGAGGTACAGCCAATAGGAGATATAGTTATTTCTTTAGAAAAAGCTTTAGAGCA
GTCAATGGAATATGGACATTCCTTTGAAAGAGAAGTAGCTTATTTAACAGCTCACAGCATGCTGCATCTTTTGGGTTATG
ACCATGAAACTGAAGAAGAAAGAAAAATTATGAGGGAAAAAGAAGAGGAAGTTATGGCAAGGCTTAATATTGGGCGGTGA

Upstream 100 bases:

>100_bases
AAACTATAAAAAATTCTTTTTTGACTGCTTTAACTGGTATGTTTCATAAAAGAATTGAGTATCCTGATATTGAACCAAAT
CAAAATAAAGAGGTGTTAGA

Downstream 100 bases:

>100_bases
TTTTGTGAAATCGAGAAATTTAATTGACAGCTTTAATTATGCGATAGAGGGCATTTTACATGCTTTTAAGACCCAAAGAA
ACATGAAGGTTCACTTTGCC

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MNILIDNRQDKVDAINLEELVEKVIKTVLEVEEVIDNVEVSVSFVDNEEIRKLNKYYRGIDKPTDVLSFPLAEFEDTYGE
VEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNIGR

Sequences:

>Translated_159_residues
MNILIDNRQDKVDAINLEELVEKVIKTVLEVEEVIDNVEVSVSFVDNEEIRKLNKYYRGIDKPTDVLSFPLAEFEDTYGE
VEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNIGR
>Mature_159_residues
MNILIDNRQDKVDAINLEELVEKVIKTVLEVEEVIDNVEVSVSFVDNEEIRKLNKYYRGIDKPTDVLSFPLAEFEDTYGE
VEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNIGR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=154, Percent_Identity=30.5194805194805, Blast_Score=67, Evalue=9e-12,
Organism=Escherichia coli, GI1786880, Length=118, Percent_Identity=38.9830508474576, Blast_Score=70, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_THEP3 (B0KA56)

Other databases:

- EMBL:   CP000924
- RefSeq:   YP_001665355.1
- ProteinModelPortal:   B0KA56
- SMR:   B0KA56
- GeneID:   5875017
- GenomeReviews:   CP000924_GR
- KEGG:   tpd:Teth39_1367
- HOGENOM:   HBG734136
- OMA:   HGILHIT
- ProtClustDB:   PRK00016
- BioCyc:   TPSE340099:TETH39_1367-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18549; Mature: 18549

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIDNRQDKVDAINLEELVEKVIKTVLEVEEVIDNVEVSVSFVDNEEIRKLNKYYRGI
CCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHHHHCCC
DKPTDVLSFPLAEFEDTYGEVEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHSFEREVA
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNIGR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNILIDNRQDKVDAINLEELVEKVIKTVLEVEEVIDNVEVSVSFVDNEEIRKLNKYYRGI
CCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHHHHCCC
DKPTDVLSFPLAEFEDTYGEVEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHSFEREVA
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNIGR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA